Experiment: Fungal_growth_media_mCAFEs_v1 with Vancomycin 0.01 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16590 and BWI76_RS16595 are separated by 24 nucleotides BWI76_RS16595 and BWI76_RS16600 are separated by 12 nucleotides BWI76_RS16600 and BWI76_RS16605 are separated by 9 nucleotides
BWI76_RS16590: BWI76_RS16590 - short-chain dehydrogenase, at 3,436,679 to 3,437,668
_RS16590
BWI76_RS16595: BWI76_RS16595 - hypothetical protein, at 3,437,693 to 3,438,211
_RS16595
BWI76_RS16600: BWI76_RS16600 - DUF421 domain-containing protein, at 3,438,224 to 3,438,670
_RS16600
BWI76_RS16605: BWI76_RS16605 - hypothetical protein, at 3,438,680 to 3,439,183
_RS16605
Position (kb)
3437
3438
3439 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3436.971 kb on - strand, within BWI76_RS16590 at 3437.313 kb on + strand, within BWI76_RS16590 at 3437.617 kb on - strand at 3437.879 kb on - strand, within BWI76_RS16595 at 3437.913 kb on + strand, within BWI76_RS16595 at 3437.931 kb on + strand, within BWI76_RS16595 at 3438.022 kb on + strand, within BWI76_RS16595 at 3438.022 kb on + strand, within BWI76_RS16595 at 3438.091 kb on + strand, within BWI76_RS16595 at 3438.091 kb on + strand, within BWI76_RS16595 at 3438.099 kb on - strand, within BWI76_RS16595 at 3438.110 kb on - strand, within BWI76_RS16595 at 3438.191 kb on + strand at 3438.198 kb on - strand at 3438.212 kb on + strand at 3438.256 kb on - strand at 3438.266 kb on - strand at 3438.266 kb on - strand at 3438.302 kb on + strand, within BWI76_RS16600 at 3438.313 kb on + strand, within BWI76_RS16600 at 3438.349 kb on - strand, within BWI76_RS16600 at 3438.393 kb on + strand, within BWI76_RS16600 at 3438.400 kb on - strand, within BWI76_RS16600 at 3438.474 kb on + strand, within BWI76_RS16600 at 3438.493 kb on + strand, within BWI76_RS16600 at 3438.493 kb on + strand, within BWI76_RS16600 at 3438.493 kb on + strand, within BWI76_RS16600 at 3438.493 kb on + strand, within BWI76_RS16600 at 3438.494 kb on + strand, within BWI76_RS16600 at 3438.501 kb on - strand, within BWI76_RS16600 at 3438.536 kb on + strand, within BWI76_RS16600 at 3438.571 kb on + strand at 3438.571 kb on + strand, within BWI76_RS16600 at 3438.571 kb on + strand, within BWI76_RS16600 at 3438.571 kb on + strand, within BWI76_RS16600 at 3438.571 kb on + strand, within BWI76_RS16600 at 3438.578 kb on + strand, within BWI76_RS16600 at 3438.579 kb on - strand, within BWI76_RS16600 at 3438.579 kb on - strand, within BWI76_RS16600 at 3438.579 kb on - strand, within BWI76_RS16600 at 3438.579 kb on - strand, within BWI76_RS16600 at 3438.579 kb on - strand, within BWI76_RS16600 at 3438.579 kb on - strand, within BWI76_RS16600 at 3438.579 kb on - strand, within BWI76_RS16600 at 3438.579 kb on - strand, within BWI76_RS16600 at 3438.579 kb on - strand, within BWI76_RS16600 at 3438.579 kb on - strand, within BWI76_RS16600 at 3438.579 kb on - strand, within BWI76_RS16600 at 3438.579 kb on - strand, within BWI76_RS16600 at 3438.593 kb on - strand, within BWI76_RS16600 at 3438.668 kb on - strand at 3438.715 kb on - strand at 3438.720 kb on + strand at 3438.763 kb on + strand, within BWI76_RS16605 at 3438.768 kb on + strand at 3438.771 kb on - strand at 3438.771 kb on - strand at 3438.840 kb on - strand, within BWI76_RS16605 at 3438.853 kb on - strand, within BWI76_RS16605 at 3438.863 kb on - strand, within BWI76_RS16605 at 3438.870 kb on - strand, within BWI76_RS16605 at 3438.870 kb on - strand, within BWI76_RS16605 at 3438.870 kb on - strand, within BWI76_RS16605 at 3438.874 kb on - strand, within BWI76_RS16605 at 3438.885 kb on - strand, within BWI76_RS16605 at 3438.885 kb on - strand, within BWI76_RS16605 at 3438.885 kb on - strand, within BWI76_RS16605 at 3438.903 kb on - strand, within BWI76_RS16605 at 3438.943 kb on - strand, within BWI76_RS16605 at 3439.064 kb on - strand, within BWI76_RS16605 at 3439.147 kb on + strand at 3439.147 kb on + strand at 3439.147 kb on + strand at 3439.155 kb on - strand at 3439.155 kb on - strand at 3439.155 kb on - strand at 3439.155 kb on - strand at 3439.155 kb on - strand at 3439.155 kb on - strand at 3439.155 kb on - strand at 3439.182 kb on + strand at 3439.190 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Vancomycin 0.01 mg/mL remove 3,436,971 - BWI76_RS16590 0.29 +0.1 3,437,313 + BWI76_RS16590 0.64 -0.4 3,437,617 - -0.2 3,437,879 - BWI76_RS16595 0.36 -0.8 3,437,913 + BWI76_RS16595 0.42 +0.5 3,437,931 + BWI76_RS16595 0.46 +1.8 3,438,022 + BWI76_RS16595 0.63 -0.8 3,438,022 + BWI76_RS16595 0.63 -0.4 3,438,091 + BWI76_RS16595 0.77 +0.2 3,438,091 + BWI76_RS16595 0.77 +1.0 3,438,099 - BWI76_RS16595 0.78 +0.2 3,438,110 - BWI76_RS16595 0.80 +1.0 3,438,191 + -0.8 3,438,198 - -2.5 3,438,212 + -1.7 3,438,256 - +2.3 3,438,266 - +1.0 3,438,266 - -0.3 3,438,302 + BWI76_RS16600 0.17 -1.6 3,438,313 + BWI76_RS16600 0.20 -0.3 3,438,349 - BWI76_RS16600 0.28 -0.3 3,438,393 + BWI76_RS16600 0.38 +2.4 3,438,400 - BWI76_RS16600 0.39 -1.6 3,438,474 + BWI76_RS16600 0.56 -1.4 3,438,493 + BWI76_RS16600 0.60 +3.8 3,438,493 + BWI76_RS16600 0.60 +1.1 3,438,493 + BWI76_RS16600 0.60 -0.0 3,438,493 + BWI76_RS16600 0.60 +0.2 3,438,494 + BWI76_RS16600 0.60 -0.0 3,438,501 - BWI76_RS16600 0.62 +0.1 3,438,536 + BWI76_RS16600 0.70 +1.0 3,438,571 + -0.0 3,438,571 + BWI76_RS16600 0.78 -0.0 3,438,571 + BWI76_RS16600 0.78 +1.4 3,438,571 + BWI76_RS16600 0.78 -1.0 3,438,571 + BWI76_RS16600 0.78 +1.0 3,438,578 + BWI76_RS16600 0.79 +0.3 3,438,579 - BWI76_RS16600 0.79 -0.6 3,438,579 - BWI76_RS16600 0.79 +0.1 3,438,579 - BWI76_RS16600 0.79 -0.9 3,438,579 - BWI76_RS16600 0.79 +2.3 3,438,579 - BWI76_RS16600 0.79 -0.6 3,438,579 - BWI76_RS16600 0.79 +1.0 3,438,579 - BWI76_RS16600 0.79 +0.7 3,438,579 - BWI76_RS16600 0.79 -2.4 3,438,579 - BWI76_RS16600 0.79 -1.6 3,438,579 - BWI76_RS16600 0.79 -0.7 3,438,579 - BWI76_RS16600 0.79 -2.0 3,438,579 - BWI76_RS16600 0.79 -0.9 3,438,593 - BWI76_RS16600 0.83 -1.8 3,438,668 - -1.6 3,438,715 - -1.4 3,438,720 + -0.6 3,438,763 + BWI76_RS16605 0.16 -1.1 3,438,768 + +0.9 3,438,771 - -0.1 3,438,771 - -0.1 3,438,840 - BWI76_RS16605 0.32 -1.6 3,438,853 - BWI76_RS16605 0.34 -0.9 3,438,863 - BWI76_RS16605 0.36 -2.4 3,438,870 - BWI76_RS16605 0.38 -0.4 3,438,870 - BWI76_RS16605 0.38 -0.9 3,438,870 - BWI76_RS16605 0.38 +0.2 3,438,874 - BWI76_RS16605 0.38 -1.8 3,438,885 - BWI76_RS16605 0.41 -0.4 3,438,885 - BWI76_RS16605 0.41 -1.1 3,438,885 - BWI76_RS16605 0.41 -2.1 3,438,903 - BWI76_RS16605 0.44 -2.8 3,438,943 - BWI76_RS16605 0.52 +2.1 3,439,064 - BWI76_RS16605 0.76 -0.6 3,439,147 + +1.6 3,439,147 + -0.1 3,439,147 + -3.3 3,439,155 - -0.8 3,439,155 - +0.9 3,439,155 - -0.1 3,439,155 - +0.9 3,439,155 - -1.9 3,439,155 - +1.4 3,439,155 - -0.1 3,439,182 + -0.6 3,439,190 - +1.1
Or see this region's nucleotide sequence