Experiment: Fungal_growth_media_mCAFEs_v1 with Vancomycin 0.01 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13670 and BWI76_RS13675 are separated by 189 nucleotides BWI76_RS13675 and BWI76_RS13680 are separated by 119 nucleotides BWI76_RS13680 and BWI76_RS13685 are separated by 4 nucleotides
BWI76_RS13670: BWI76_RS13670 - NarK family nitrate/nitrite MFS transporter, at 2,852,208 to 2,853,596
_RS13670
BWI76_RS13675: BWI76_RS13675 - TetR family transcriptional regulator, at 2,853,786 to 2,854,361
_RS13675
BWI76_RS13680: BWI76_RS13680 - methyl viologen resistance protein SmvA, at 2,854,481 to 2,855,971
_RS13680
BWI76_RS13685: BWI76_RS13685 - IclR family transcriptional regulator, at 2,855,976 to 2,856,773
_RS13685
Position (kb)
2854
2855
2856 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2853.601 kb on - strand at 2853.623 kb on - strand at 2853.689 kb on - strand at 2853.693 kb on + strand at 2853.701 kb on - strand at 2853.774 kb on + strand at 2853.781 kb on - strand at 2853.782 kb on - strand at 2853.782 kb on - strand at 2853.880 kb on + strand, within BWI76_RS13675 at 2853.888 kb on - strand, within BWI76_RS13675 at 2853.888 kb on - strand, within BWI76_RS13675 at 2853.931 kb on + strand, within BWI76_RS13675 at 2853.939 kb on - strand, within BWI76_RS13675 at 2853.955 kb on - strand, within BWI76_RS13675 at 2853.988 kb on - strand, within BWI76_RS13675 at 2853.996 kb on - strand, within BWI76_RS13675 at 2854.015 kb on + strand, within BWI76_RS13675 at 2854.015 kb on + strand, within BWI76_RS13675 at 2854.015 kb on + strand, within BWI76_RS13675 at 2854.023 kb on - strand, within BWI76_RS13675 at 2854.023 kb on - strand, within BWI76_RS13675 at 2854.023 kb on - strand, within BWI76_RS13675 at 2854.193 kb on - strand, within BWI76_RS13675 at 2854.219 kb on + strand, within BWI76_RS13675 at 2854.221 kb on - strand, within BWI76_RS13675 at 2854.483 kb on - strand at 2854.580 kb on - strand at 2854.586 kb on - strand at 2854.713 kb on - strand, within BWI76_RS13680 at 2855.146 kb on + strand, within BWI76_RS13680 at 2855.196 kb on - strand, within BWI76_RS13680 at 2855.310 kb on + strand, within BWI76_RS13680 at 2855.815 kb on + strand, within BWI76_RS13680 at 2856.585 kb on + strand, within BWI76_RS13685 at 2856.657 kb on - strand, within BWI76_RS13685
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Vancomycin 0.01 mg/mL remove 2,853,601 - +0.9 2,853,623 - -0.6 2,853,689 - +1.3 2,853,693 + +1.5 2,853,701 - -0.7 2,853,774 + +0.3 2,853,781 - +0.1 2,853,782 - -0.7 2,853,782 - -0.0 2,853,880 + BWI76_RS13675 0.16 -2.4 2,853,888 - BWI76_RS13675 0.18 -0.7 2,853,888 - BWI76_RS13675 0.18 +0.9 2,853,931 + BWI76_RS13675 0.25 +2.3 2,853,939 - BWI76_RS13675 0.27 +1.6 2,853,955 - BWI76_RS13675 0.29 +0.2 2,853,988 - BWI76_RS13675 0.35 +1.8 2,853,996 - BWI76_RS13675 0.36 +0.9 2,854,015 + BWI76_RS13675 0.40 -0.1 2,854,015 + BWI76_RS13675 0.40 +1.3 2,854,015 + BWI76_RS13675 0.40 -0.7 2,854,023 - BWI76_RS13675 0.41 -1.4 2,854,023 - BWI76_RS13675 0.41 -0.1 2,854,023 - BWI76_RS13675 0.41 +0.2 2,854,193 - BWI76_RS13675 0.71 -0.6 2,854,219 + BWI76_RS13675 0.75 -0.7 2,854,221 - BWI76_RS13675 0.76 -1.7 2,854,483 - -0.1 2,854,580 - +0.3 2,854,586 - +0.6 2,854,713 - BWI76_RS13680 0.16 +1.2 2,855,146 + BWI76_RS13680 0.45 +0.7 2,855,196 - BWI76_RS13680 0.48 +1.0 2,855,310 + BWI76_RS13680 0.56 +0.6 2,855,815 + BWI76_RS13680 0.89 +1.1 2,856,585 + BWI76_RS13685 0.76 -0.7 2,856,657 - BWI76_RS13685 0.85 +0.8
Or see this region's nucleotide sequence