Experiment: Fungal_growth_media_mCAFEs_v1 with Vancomycin 0.01 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS06200 and BWI76_RS06205 are separated by 45 nucleotides BWI76_RS06205 and BWI76_RS06210 are separated by 37 nucleotides BWI76_RS06210 and BWI76_RS06215 are separated by 37 nucleotides BWI76_RS06215 and BWI76_RS06220 are separated by 288 nucleotides
BWI76_RS06200: BWI76_RS06200 - hypothetical protein, at 1,300,189 to 1,300,473
_RS06200
BWI76_RS06205: BWI76_RS06205 - recombination-associated protein RdgC, at 1,300,519 to 1,301,430
_RS06205
BWI76_RS06210: BWI76_RS06210 - fructokinase, at 1,301,468 to 1,302,426
_RS06210
BWI76_RS06215: BWI76_RS06215 - NUDIX hydrolase, at 1,302,464 to 1,302,826
_RS06215
BWI76_RS06220: BWI76_RS06220 - exonuclease subunit SbcC, at 1,303,115 to 1,306,249
_RS06220
Position (kb)
1301
1302
1303 Strain fitness (log2 ratio)
-2
-1
0
1 at 1300.664 kb on - strand, within BWI76_RS06205 at 1300.989 kb on - strand, within BWI76_RS06205 at 1301.100 kb on - strand, within BWI76_RS06205 at 1301.333 kb on + strand, within BWI76_RS06205 at 1301.688 kb on + strand, within BWI76_RS06210 at 1301.740 kb on - strand, within BWI76_RS06210 at 1302.125 kb on + strand, within BWI76_RS06210 at 1302.146 kb on + strand, within BWI76_RS06210 at 1302.154 kb on - strand, within BWI76_RS06210 at 1302.308 kb on - strand, within BWI76_RS06210 at 1302.308 kb on - strand, within BWI76_RS06210 at 1302.454 kb on + strand at 1302.490 kb on - strand at 1302.530 kb on + strand, within BWI76_RS06215 at 1303.027 kb on - strand at 1303.354 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Vancomycin 0.01 mg/mL remove 1,300,664 - BWI76_RS06205 0.16 -1.4 1,300,989 - BWI76_RS06205 0.52 +0.4 1,301,100 - BWI76_RS06205 0.64 +1.3 1,301,333 + BWI76_RS06205 0.89 -1.0 1,301,688 + BWI76_RS06210 0.23 -0.6 1,301,740 - BWI76_RS06210 0.28 +1.0 1,302,125 + BWI76_RS06210 0.69 -0.1 1,302,146 + BWI76_RS06210 0.71 -0.5 1,302,154 - BWI76_RS06210 0.72 -0.4 1,302,308 - BWI76_RS06210 0.88 -2.4 1,302,308 - BWI76_RS06210 0.88 -0.7 1,302,454 + +1.0 1,302,490 - -0.5 1,302,530 + BWI76_RS06215 0.18 +1.3 1,303,027 - -0.6 1,303,354 + +0.4
Or see this region's nucleotide sequence