Experiment: Fungal_growth_media_mCAFEs_v1 with Vancomycin 0.01 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04585 and BWI76_RS04590 are separated by 10 nucleotides BWI76_RS04590 and BWI76_RS04595 are separated by 337 nucleotides
BWI76_RS04585: BWI76_RS04585 - L-arabinose isomerase, at 953,218 to 954,720
_RS04585
BWI76_RS04590: BWI76_RS04590 - ribulokinase, at 954,731 to 956,440
_RS04590
BWI76_RS04595: BWI76_RS04595 - DNA-binding transcriptional regulator AraC, at 956,778 to 957,623
_RS04595
Position (kb) 954
955
956
957 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 953.743 kb on + strand, within BWI76_RS04585 at 953.916 kb on + strand, within BWI76_RS04585 at 953.924 kb on - strand, within BWI76_RS04585 at 953.965 kb on - strand, within BWI76_RS04585 at 954.053 kb on + strand, within BWI76_RS04585 at 954.090 kb on + strand, within BWI76_RS04585 at 954.092 kb on + strand, within BWI76_RS04585 at 954.097 kb on + strand, within BWI76_RS04585 at 954.267 kb on + strand, within BWI76_RS04585 at 954.275 kb on - strand, within BWI76_RS04585 at 954.641 kb on + strand at 954.662 kb on - strand at 954.972 kb on + strand, within BWI76_RS04590 at 954.977 kb on + strand, within BWI76_RS04590 at 954.982 kb on + strand, within BWI76_RS04590 at 955.036 kb on - strand, within BWI76_RS04590 at 955.114 kb on + strand, within BWI76_RS04590 at 955.187 kb on + strand, within BWI76_RS04590 at 955.307 kb on - strand, within BWI76_RS04590 at 955.335 kb on + strand, within BWI76_RS04590 at 955.335 kb on + strand, within BWI76_RS04590 at 955.372 kb on - strand, within BWI76_RS04590 at 955.512 kb on - strand, within BWI76_RS04590 at 955.666 kb on - strand, within BWI76_RS04590 at 955.726 kb on + strand, within BWI76_RS04590 at 955.911 kb on - strand, within BWI76_RS04590 at 956.018 kb on - strand, within BWI76_RS04590 at 956.029 kb on + strand, within BWI76_RS04590 at 956.139 kb on + strand, within BWI76_RS04590 at 956.223 kb on - strand, within BWI76_RS04590 at 956.310 kb on + strand at 956.352 kb on - strand at 956.484 kb on + strand at 956.487 kb on - strand at 956.539 kb on - strand at 956.749 kb on + strand at 956.908 kb on + strand, within BWI76_RS04595 at 956.916 kb on - strand, within BWI76_RS04595 at 956.921 kb on - strand, within BWI76_RS04595 at 956.966 kb on + strand, within BWI76_RS04595 at 957.063 kb on + strand, within BWI76_RS04595 at 957.197 kb on - strand, within BWI76_RS04595 at 957.217 kb on + strand, within BWI76_RS04595 at 957.225 kb on - strand, within BWI76_RS04595 at 957.302 kb on + strand, within BWI76_RS04595
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Vancomycin 0.01 mg/mL remove 953,743 + BWI76_RS04585 0.35 +0.5 953,916 + BWI76_RS04585 0.46 +0.4 953,924 - BWI76_RS04585 0.47 -0.4 953,965 - BWI76_RS04585 0.50 +0.7 954,053 + BWI76_RS04585 0.56 +0.7 954,090 + BWI76_RS04585 0.58 +0.5 954,092 + BWI76_RS04585 0.58 +0.3 954,097 + BWI76_RS04585 0.58 +1.3 954,267 + BWI76_RS04585 0.70 +1.2 954,275 - BWI76_RS04585 0.70 -0.5 954,641 + +0.6 954,662 - +0.4 954,972 + BWI76_RS04590 0.14 -0.9 954,977 + BWI76_RS04590 0.14 -0.1 954,982 + BWI76_RS04590 0.15 +0.3 955,036 - BWI76_RS04590 0.18 +0.5 955,114 + BWI76_RS04590 0.22 +1.7 955,187 + BWI76_RS04590 0.27 -1.0 955,307 - BWI76_RS04590 0.34 +0.1 955,335 + BWI76_RS04590 0.35 -0.2 955,335 + BWI76_RS04590 0.35 +0.5 955,372 - BWI76_RS04590 0.37 +2.6 955,512 - BWI76_RS04590 0.46 +0.2 955,666 - BWI76_RS04590 0.55 +0.1 955,726 + BWI76_RS04590 0.58 +1.3 955,911 - BWI76_RS04590 0.69 -0.5 956,018 - BWI76_RS04590 0.75 -1.5 956,029 + BWI76_RS04590 0.76 +0.9 956,139 + BWI76_RS04590 0.82 -0.8 956,223 - BWI76_RS04590 0.87 -0.9 956,310 + -3.2 956,352 - +1.6 956,484 + -0.1 956,487 - +2.5 956,539 - -0.8 956,749 + +0.8 956,908 + BWI76_RS04595 0.15 +0.1 956,916 - BWI76_RS04595 0.16 +0.2 956,921 - BWI76_RS04595 0.17 -0.1 956,966 + BWI76_RS04595 0.22 -0.6 957,063 + BWI76_RS04595 0.34 +1.4 957,197 - BWI76_RS04595 0.50 +1.1 957,217 + BWI76_RS04595 0.52 +1.1 957,225 - BWI76_RS04595 0.53 -0.1 957,302 + BWI76_RS04595 0.62 +0.2
Or see this region's nucleotide sequence