Experiment: Fungal_growth_media_mCAFEs_v1 with Vancomycin 0.01 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01615 and BWI76_RS01620 are separated by 4 nucleotides BWI76_RS01620 and BWI76_RS01625 are separated by 142 nucleotides BWI76_RS01625 and BWI76_RS01630 are separated by 53 nucleotides
BWI76_RS01615: BWI76_RS01615 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase, at 327,829 to 329,418
_RS01615
BWI76_RS01620: BWI76_RS01620 - hypothetical protein, at 329,423 to 329,650
_RS01620
BWI76_RS01625: BWI76_RS01625 - hypothetical protein, at 329,793 to 329,998
_RS01625
BWI76_RS01630: BWI76_RS01630 - 16S ribosomal RNA, at 330,052 to 331,605
_RS01630
Position (kb) 329
330 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 328.543 kb on + strand, within BWI76_RS01615 at 328.608 kb on - strand, within BWI76_RS01615 at 328.639 kb on - strand, within BWI76_RS01615 at 328.689 kb on - strand, within BWI76_RS01615 at 328.739 kb on + strand, within BWI76_RS01615 at 328.775 kb on - strand, within BWI76_RS01615 at 328.858 kb on + strand, within BWI76_RS01615 at 328.896 kb on + strand, within BWI76_RS01615 at 328.999 kb on - strand, within BWI76_RS01615 at 329.130 kb on + strand, within BWI76_RS01615 at 329.218 kb on - strand, within BWI76_RS01615 at 329.306 kb on + strand at 329.312 kb on - strand at 329.368 kb on - strand at 329.428 kb on - strand at 329.594 kb on + strand, within BWI76_RS01620 at 329.594 kb on + strand, within BWI76_RS01620 at 329.600 kb on + strand, within BWI76_RS01620 at 329.605 kb on + strand, within BWI76_RS01620 at 330.515 kb on + strand, within BWI76_RS01630
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Vancomycin 0.01 mg/mL remove 328,543 + BWI76_RS01615 0.45 -1.6 328,608 - BWI76_RS01615 0.49 -4.5 328,639 - BWI76_RS01615 0.51 -3.8 328,689 - BWI76_RS01615 0.54 -2.2 328,739 + BWI76_RS01615 0.57 -0.8 328,775 - BWI76_RS01615 0.59 -3.2 328,858 + BWI76_RS01615 0.65 -2.9 328,896 + BWI76_RS01615 0.67 -1.2 328,999 - BWI76_RS01615 0.74 -3.4 329,130 + BWI76_RS01615 0.82 -2.6 329,218 - BWI76_RS01615 0.87 -4.1 329,306 + -0.8 329,312 - -2.8 329,368 - -2.2 329,428 - -2.6 329,594 + BWI76_RS01620 0.75 +1.3 329,594 + BWI76_RS01620 0.75 +1.1 329,600 + BWI76_RS01620 0.78 +1.8 329,605 + BWI76_RS01620 0.80 +0.2 330,515 + BWI76_RS01630 0.30 -0.2
Or see this region's nucleotide sequence