Experiment: Indole-3-pyruvic 5 mM in soil extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004106 and ABIE53_004107 are separated by 70 nucleotides ABIE53_004107 and ABIE53_004108 are separated by 45 nucleotides
ABIE53_004106: ABIE53_004106 - multidrug efflux pump, at 271,408 to 274,593
_004106
ABIE53_004107: ABIE53_004107 - multidrug efflux system membrane fusion protein, at 274,664 to 275,872
_004107
ABIE53_004108: ABIE53_004108 - acetyl esterase, at 275,918 to 276,772
_004108
Position (kb) 274
275
276 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 273.735 kb on + strand, within ABIE53_004106 at 273.735 kb on + strand, within ABIE53_004106 at 273.735 kb on + strand, within ABIE53_004106 at 273.735 kb on + strand, within ABIE53_004106 at 273.735 kb on + strand, within ABIE53_004106 at 273.736 kb on - strand, within ABIE53_004106 at 273.761 kb on + strand, within ABIE53_004106 at 273.762 kb on - strand, within ABIE53_004106 at 273.762 kb on - strand, within ABIE53_004106 at 273.803 kb on + strand, within ABIE53_004106 at 273.803 kb on + strand, within ABIE53_004106 at 273.803 kb on + strand, within ABIE53_004106 at 273.804 kb on - strand, within ABIE53_004106 at 274.040 kb on + strand, within ABIE53_004106 at 274.041 kb on - strand, within ABIE53_004106 at 274.041 kb on - strand, within ABIE53_004106 at 274.041 kb on - strand, within ABIE53_004106 at 274.130 kb on + strand, within ABIE53_004106 at 274.130 kb on + strand, within ABIE53_004106 at 274.130 kb on + strand, within ABIE53_004106 at 274.130 kb on + strand, within ABIE53_004106 at 274.130 kb on + strand, within ABIE53_004106 at 274.130 kb on + strand, within ABIE53_004106 at 274.131 kb on - strand, within ABIE53_004106 at 274.131 kb on - strand, within ABIE53_004106 at 274.131 kb on - strand, within ABIE53_004106 at 274.131 kb on - strand, within ABIE53_004106 at 274.131 kb on - strand, within ABIE53_004106 at 274.131 kb on - strand, within ABIE53_004106 at 274.131 kb on - strand, within ABIE53_004106 at 274.131 kb on - strand, within ABIE53_004106 at 274.131 kb on - strand, within ABIE53_004106 at 274.185 kb on + strand, within ABIE53_004106 at 274.186 kb on - strand, within ABIE53_004106 at 274.186 kb on - strand, within ABIE53_004106 at 274.339 kb on - strand at 274.339 kb on - strand at 274.358 kb on + strand at 274.358 kb on + strand at 274.358 kb on + strand at 274.358 kb on + strand at 274.358 kb on + strand at 274.358 kb on + strand at 274.358 kb on + strand at 274.358 kb on + strand at 274.358 kb on + strand at 274.358 kb on + strand at 274.359 kb on - strand at 274.359 kb on - strand at 274.359 kb on - strand at 274.359 kb on - strand at 274.359 kb on - strand at 274.359 kb on - strand at 274.359 kb on - strand at 274.359 kb on - strand at 274.359 kb on - strand at 274.359 kb on - strand at 274.359 kb on - strand at 274.359 kb on - strand at 274.359 kb on - strand at 274.359 kb on - strand at 274.359 kb on - strand at 274.359 kb on - strand at 274.567 kb on - strand at 274.585 kb on + strand at 274.850 kb on - strand, within ABIE53_004107 at 274.850 kb on - strand, within ABIE53_004107 at 274.872 kb on + strand, within ABIE53_004107 at 274.996 kb on - strand, within ABIE53_004107 at 275.175 kb on + strand, within ABIE53_004107 at 275.176 kb on - strand, within ABIE53_004107 at 275.176 kb on - strand, within ABIE53_004107 at 275.184 kb on + strand, within ABIE53_004107 at 275.184 kb on + strand, within ABIE53_004107 at 275.184 kb on + strand, within ABIE53_004107 at 275.185 kb on - strand, within ABIE53_004107 at 275.185 kb on - strand, within ABIE53_004107 at 275.185 kb on - strand, within ABIE53_004107 at 275.185 kb on - strand, within ABIE53_004107 at 275.185 kb on - strand, within ABIE53_004107 at 275.185 kb on - strand, within ABIE53_004107 at 275.185 kb on - strand, within ABIE53_004107 at 275.214 kb on + strand, within ABIE53_004107 at 275.214 kb on + strand, within ABIE53_004107 at 275.215 kb on - strand, within ABIE53_004107 at 275.215 kb on - strand, within ABIE53_004107 at 275.335 kb on + strand, within ABIE53_004107 at 275.335 kb on + strand, within ABIE53_004107 at 275.335 kb on + strand, within ABIE53_004107 at 275.336 kb on - strand, within ABIE53_004107 at 275.336 kb on - strand, within ABIE53_004107 at 275.337 kb on + strand, within ABIE53_004107 at 275.337 kb on + strand, within ABIE53_004107 at 275.688 kb on + strand, within ABIE53_004107 at 275.688 kb on + strand, within ABIE53_004107 at 275.688 kb on + strand, within ABIE53_004107 at 275.689 kb on - strand, within ABIE53_004107 at 275.819 kb on + strand at 275.819 kb on + strand at 275.819 kb on + strand at 275.820 kb on - strand at 275.826 kb on - strand at 275.826 kb on - strand at 275.826 kb on - strand at 275.826 kb on - strand at 275.876 kb on + strand at 275.876 kb on + strand at 275.876 kb on + strand at 275.876 kb on + strand at 275.876 kb on + strand at 275.876 kb on + strand at 275.877 kb on - strand at 275.877 kb on - strand at 275.877 kb on - strand at 275.877 kb on - strand at 275.877 kb on - strand at 275.877 kb on - strand at 275.877 kb on - strand at 275.877 kb on - strand at 275.877 kb on - strand at 275.877 kb on - strand at 275.877 kb on - strand at 275.896 kb on + strand at 276.067 kb on - strand, within ABIE53_004108 at 276.067 kb on - strand, within ABIE53_004108 at 276.067 kb on - strand, within ABIE53_004108 at 276.163 kb on - strand, within ABIE53_004108 at 276.195 kb on + strand, within ABIE53_004108 at 276.195 kb on + strand, within ABIE53_004108 at 276.195 kb on + strand, within ABIE53_004108 at 276.196 kb on - strand, within ABIE53_004108 at 276.355 kb on + strand, within ABIE53_004108 at 276.356 kb on - strand, within ABIE53_004108 at 276.403 kb on + strand, within ABIE53_004108 at 276.403 kb on + strand, within ABIE53_004108 at 276.404 kb on - strand, within ABIE53_004108 at 276.404 kb on - strand, within ABIE53_004108 at 276.501 kb on + strand, within ABIE53_004108 at 276.527 kb on + strand, within ABIE53_004108 at 276.527 kb on + strand, within ABIE53_004108 at 276.528 kb on - strand, within ABIE53_004108 at 276.528 kb on - strand, within ABIE53_004108 at 276.528 kb on - strand, within ABIE53_004108 at 276.528 kb on - strand, within ABIE53_004108 at 276.528 kb on - strand, within ABIE53_004108 at 276.543 kb on + strand, within ABIE53_004108 at 276.583 kb on + strand, within ABIE53_004108 at 276.584 kb on - strand, within ABIE53_004108 at 276.604 kb on - strand, within ABIE53_004108 at 276.605 kb on - strand, within ABIE53_004108 at 276.677 kb on + strand, within ABIE53_004108 at 276.677 kb on + strand, within ABIE53_004108 at 276.677 kb on + strand, within ABIE53_004108 at 276.677 kb on + strand, within ABIE53_004108 at 276.677 kb on + strand, within ABIE53_004108 at 276.677 kb on + strand, within ABIE53_004108 at 276.677 kb on + strand, within ABIE53_004108 at 276.677 kb on + strand, within ABIE53_004108 at 276.678 kb on - strand, within ABIE53_004108 at 276.678 kb on - strand, within ABIE53_004108 at 276.678 kb on - strand, within ABIE53_004108 at 276.678 kb on - strand, within ABIE53_004108 at 276.678 kb on - strand, within ABIE53_004108 at 276.678 kb on - strand, within ABIE53_004108 at 276.678 kb on - strand, within ABIE53_004108 at 276.683 kb on + strand, within ABIE53_004108 at 276.683 kb on + strand, within ABIE53_004108 at 276.683 kb on + strand, within ABIE53_004108 at 276.683 kb on + strand, within ABIE53_004108 at 276.684 kb on - strand, within ABIE53_004108 at 276.684 kb on - strand, within ABIE53_004108 at 276.684 kb on - strand, within ABIE53_004108 at 276.750 kb on + strand at 276.750 kb on + strand at 276.834 kb on - strand at 276.838 kb on - strand at 276.838 kb on - strand at 276.838 kb on - strand at 276.838 kb on - strand at 276.845 kb on + strand at 276.846 kb on - strand at 276.846 kb on - strand at 276.847 kb on + strand at 276.848 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Indole-3-pyruvic 5 mM in soil extract remove 273,735 + ABIE53_004106 0.73 +2.6 273,735 + ABIE53_004106 0.73 -0.4 273,735 + ABIE53_004106 0.73 +1.4 273,735 + ABIE53_004106 0.73 +0.4 273,735 + ABIE53_004106 0.73 -0.8 273,736 - ABIE53_004106 0.73 -1.1 273,761 + ABIE53_004106 0.74 -1.6 273,762 - ABIE53_004106 0.74 +1.1 273,762 - ABIE53_004106 0.74 +1.7 273,803 + ABIE53_004106 0.75 +1.5 273,803 + ABIE53_004106 0.75 +0.5 273,803 + ABIE53_004106 0.75 +0.7 273,804 - ABIE53_004106 0.75 -1.2 274,040 + ABIE53_004106 0.83 +0.5 274,041 - ABIE53_004106 0.83 -1.1 274,041 - ABIE53_004106 0.83 +0.4 274,041 - ABIE53_004106 0.83 -1.0 274,130 + ABIE53_004106 0.85 +0.6 274,130 + ABIE53_004106 0.85 -1.9 274,130 + ABIE53_004106 0.85 +0.4 274,130 + ABIE53_004106 0.85 +0.6 274,130 + ABIE53_004106 0.85 +0.3 274,130 + ABIE53_004106 0.85 +0.6 274,131 - ABIE53_004106 0.85 -0.4 274,131 - ABIE53_004106 0.85 +1.6 274,131 - ABIE53_004106 0.85 -0.6 274,131 - ABIE53_004106 0.85 +0.3 274,131 - ABIE53_004106 0.85 +0.3 274,131 - ABIE53_004106 0.85 +1.4 274,131 - ABIE53_004106 0.85 +0.7 274,131 - ABIE53_004106 0.85 -0.9 274,131 - ABIE53_004106 0.85 -0.2 274,185 + ABIE53_004106 0.87 +0.1 274,186 - ABIE53_004106 0.87 -1.5 274,186 - ABIE53_004106 0.87 +0.7 274,339 - +0.8 274,339 - +2.4 274,358 + -0.4 274,358 + +2.4 274,358 + -0.7 274,358 + -1.6 274,358 + +2.4 274,358 + +2.4 274,358 + +2.8 274,358 + +1.1 274,358 + -0.6 274,358 + -0.2 274,359 - +0.9 274,359 - +0.1 274,359 - -0.2 274,359 - +1.3 274,359 - -0.4 274,359 - +0.7 274,359 - +1.4 274,359 - +0.3 274,359 - +0.0 274,359 - +2.2 274,359 - +1.2 274,359 - -1.2 274,359 - -0.5 274,359 - +3.0 274,359 - -0.9 274,359 - +0.3 274,567 - +0.4 274,585 + -0.4 274,850 - ABIE53_004107 0.15 +2.4 274,850 - ABIE53_004107 0.15 -0.5 274,872 + ABIE53_004107 0.17 +1.3 274,996 - ABIE53_004107 0.27 -0.3 275,175 + ABIE53_004107 0.42 -0.6 275,176 - ABIE53_004107 0.42 -1.8 275,176 - ABIE53_004107 0.42 -0.0 275,184 + ABIE53_004107 0.43 -0.7 275,184 + ABIE53_004107 0.43 +3.0 275,184 + ABIE53_004107 0.43 +0.2 275,185 - ABIE53_004107 0.43 -0.6 275,185 - ABIE53_004107 0.43 -0.2 275,185 - ABIE53_004107 0.43 -0.2 275,185 - ABIE53_004107 0.43 +2.4 275,185 - ABIE53_004107 0.43 -0.7 275,185 - ABIE53_004107 0.43 +2.9 275,185 - ABIE53_004107 0.43 -2.6 275,214 + ABIE53_004107 0.45 -0.7 275,214 + ABIE53_004107 0.45 +0.1 275,215 - ABIE53_004107 0.46 +0.0 275,215 - ABIE53_004107 0.46 +1.6 275,335 + ABIE53_004107 0.56 +0.1 275,335 + ABIE53_004107 0.56 +0.2 275,335 + ABIE53_004107 0.56 -0.9 275,336 - ABIE53_004107 0.56 +1.0 275,336 - ABIE53_004107 0.56 +0.1 275,337 + ABIE53_004107 0.56 +1.4 275,337 + ABIE53_004107 0.56 -1.2 275,688 + ABIE53_004107 0.85 -0.4 275,688 + ABIE53_004107 0.85 -0.4 275,688 + ABIE53_004107 0.85 -1.0 275,689 - ABIE53_004107 0.85 -0.5 275,819 + -0.7 275,819 + +1.3 275,819 + +0.4 275,820 - -0.2 275,826 - -0.3 275,826 - -2.0 275,826 - -0.4 275,826 - +6.2 275,876 + +2.3 275,876 + -0.5 275,876 + -1.0 275,876 + +2.4 275,876 + +0.1 275,876 + -0.4 275,877 - -0.9 275,877 - -1.0 275,877 - -2.0 275,877 - -2.3 275,877 - -0.4 275,877 - -1.9 275,877 - -1.0 275,877 - -1.4 275,877 - -0.6 275,877 - -0.6 275,877 - +0.1 275,896 + +1.2 276,067 - ABIE53_004108 0.17 -0.9 276,067 - ABIE53_004108 0.17 -0.9 276,067 - ABIE53_004108 0.17 -1.8 276,163 - ABIE53_004108 0.29 +1.4 276,195 + ABIE53_004108 0.32 +1.1 276,195 + ABIE53_004108 0.32 +0.7 276,195 + ABIE53_004108 0.32 -0.2 276,196 - ABIE53_004108 0.33 -1.8 276,355 + ABIE53_004108 0.51 +0.5 276,356 - ABIE53_004108 0.51 -1.9 276,403 + ABIE53_004108 0.57 -1.7 276,403 + ABIE53_004108 0.57 -1.5 276,404 - ABIE53_004108 0.57 -2.1 276,404 - ABIE53_004108 0.57 +1.2 276,501 + ABIE53_004108 0.68 -0.6 276,527 + ABIE53_004108 0.71 -2.9 276,527 + ABIE53_004108 0.71 +0.0 276,528 - ABIE53_004108 0.71 +0.6 276,528 - ABIE53_004108 0.71 +1.1 276,528 - ABIE53_004108 0.71 -3.2 276,528 - ABIE53_004108 0.71 +2.4 276,528 - ABIE53_004108 0.71 -2.4 276,543 + ABIE53_004108 0.73 +2.4 276,583 + ABIE53_004108 0.78 +0.3 276,584 - ABIE53_004108 0.78 -0.2 276,604 - ABIE53_004108 0.80 -2.4 276,605 - ABIE53_004108 0.80 -1.6 276,677 + ABIE53_004108 0.89 +0.8 276,677 + ABIE53_004108 0.89 +0.1 276,677 + ABIE53_004108 0.89 +0.8 276,677 + ABIE53_004108 0.89 -0.1 276,677 + ABIE53_004108 0.89 +0.4 276,677 + ABIE53_004108 0.89 -0.2 276,677 + ABIE53_004108 0.89 -1.1 276,677 + ABIE53_004108 0.89 +1.6 276,678 - ABIE53_004108 0.89 -1.7 276,678 - ABIE53_004108 0.89 +1.1 276,678 - ABIE53_004108 0.89 +2.4 276,678 - ABIE53_004108 0.89 -0.6 276,678 - ABIE53_004108 0.89 -1.1 276,678 - ABIE53_004108 0.89 +0.0 276,678 - ABIE53_004108 0.89 -0.4 276,683 + ABIE53_004108 0.89 -0.7 276,683 + ABIE53_004108 0.89 -2.0 276,683 + ABIE53_004108 0.89 -1.0 276,683 + ABIE53_004108 0.89 +0.4 276,684 - ABIE53_004108 0.90 -0.8 276,684 - ABIE53_004108 0.90 +1.1 276,684 - ABIE53_004108 0.90 -1.3 276,750 + -1.0 276,750 + -1.0 276,834 - -1.7 276,838 - -2.2 276,838 - -0.9 276,838 - -0.9 276,838 - -0.4 276,845 + +1.5 276,846 - -1.0 276,846 - -1.9 276,847 + +1.9 276,848 - -2.7
Or see this region's nucleotide sequence