Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003379

Experiment: Indole-3-pyruvic 5 mM in soil extract

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Indole-3-pyruvic 5 mM in soil extract
3,799,791	+		ABIE53_003377	0.44	-0.3
3,799,791	+		ABIE53_003377	0.44	+2.4
3,799,791	+		ABIE53_003377	0.44	+1.0
3,799,791	+		ABIE53_003377	0.44	+1.6
3,799,791	+		ABIE53_003377	0.44	+2.2
3,799,791	+		ABIE53_003377	0.44	-2.1
3,799,792	-		ABIE53_003377	0.44	-0.2
3,799,792	-		ABIE53_003377	0.44	+0.1
3,799,792	-		ABIE53_003377	0.44	-0.4
3,799,792	-		ABIE53_003377	0.44	-0.4
3,799,792	-		ABIE53_003377	0.44	-0.2
3,799,792	-		ABIE53_003377	0.44	+2.2
3,799,792	-		ABIE53_003377	0.44	-1.5
3,799,792	-		ABIE53_003377	0.44	+4.2
3,799,828	+		ABIE53_003377	0.51	-0.2
3,799,828	+		ABIE53_003377	0.51	-0.8
3,799,828	+		ABIE53_003377	0.51	+2.6
3,799,828	+		ABIE53_003377	0.51	+3.4
3,799,828	+		ABIE53_003377	0.51	-0.0
3,799,828	+		ABIE53_003377	0.51	+0.6
3,799,828	+		ABIE53_003377	0.51	-1.2
3,799,828	+		ABIE53_003377	0.51	+0.5
3,799,828	+		ABIE53_003377	0.51	-0.8
3,799,828	+		ABIE53_003377	0.51	+0.1
3,799,828	+		ABIE53_003377	0.51	-0.9
3,799,828	+		ABIE53_003377	0.51	+2.0
3,799,828	+		ABIE53_003377	0.51	-0.1
3,799,828	+		ABIE53_003377	0.51	-0.9
3,799,828	+		ABIE53_003377	0.51	-0.2
3,799,829	-		ABIE53_003377	0.51	+4.2
3,799,829	-		ABIE53_003377	0.51	-0.3
3,799,829	-		ABIE53_003377	0.51	-0.8
3,799,829	-		ABIE53_003377	0.51	+0.8
3,799,829	-		ABIE53_003377	0.51	+0.1
3,799,829	-		ABIE53_003377	0.51	-0.7
3,799,829	-		ABIE53_003377	0.51	-0.0
3,799,873	+		ABIE53_003377	0.60	+0.6
3,799,874	-		ABIE53_003377	0.60	-1.0
3,799,874	-		ABIE53_003377	0.60	+2.0
3,799,898	+		ABIE53_003377	0.65	-0.2
3,799,940	+		ABIE53_003377	0.73	+0.6
3,799,953	+		ABIE53_003377	0.75	+0.8
3,800,076	+				+2.6
3,800,076	+				-1.1
3,800,077	-				-0.7
3,800,077	-				-1.8
3,800,077	-				-0.7
3,800,077	-				-0.8
3,800,077	-				-0.6
3,800,077	-				+0.9
3,800,077	-				-0.4
3,800,077	-				-0.5
3,800,234	+		ABIE53_003378	0.18	+3.5
3,800,234	+		ABIE53_003378	0.18	+1.5
3,800,235	-		ABIE53_003378	0.18	+2.1
3,800,235	-		ABIE53_003378	0.18	+1.4
3,800,246	+		ABIE53_003378	0.20	+2.3
3,800,247	-		ABIE53_003378	0.20	+0.8
3,800,267	+		ABIE53_003378	0.24	+3.6
3,800,267	+		ABIE53_003378	0.24	+2.1
3,800,267	+		ABIE53_003378	0.24	+0.6
3,800,267	+		ABIE53_003378	0.24	-1.3
3,800,267	+		ABIE53_003378	0.24	+0.1
3,800,268	-		ABIE53_003378	0.24	+3.6
3,800,268	-		ABIE53_003378	0.24	+1.7
3,800,269	+		ABIE53_003378	0.25	+3.4
3,800,269	+		ABIE53_003378	0.25	+1.0
3,800,269	+		ABIE53_003378	0.25	+3.7
3,800,269	+		ABIE53_003378	0.25	+5.7
3,800,269	+		ABIE53_003378	0.25	+1.8
3,800,269	+		ABIE53_003378	0.25	+2.2
3,800,269	+		ABIE53_003378	0.25	+1.5
3,800,269	+		ABIE53_003378	0.25	+1.5
3,800,269	+		ABIE53_003378	0.25	+0.6
3,800,269	+		ABIE53_003378	0.25	+3.0
3,800,270	-		ABIE53_003378	0.25	+2.0
3,800,270	-		ABIE53_003378	0.25	+3.6
3,800,270	-		ABIE53_003378	0.25	+3.2
3,800,270	-		ABIE53_003378	0.25	+1.7
3,800,296	+		ABIE53_003378	0.30	+2.9
3,800,296	+		ABIE53_003378	0.30	+2.3
3,800,296	+		ABIE53_003378	0.30	+1.0
3,800,296	+		ABIE53_003378	0.30	+2.9
3,800,296	+		ABIE53_003378	0.30	+4.3
3,800,332	+		ABIE53_003378	0.37	+0.2
3,800,332	+		ABIE53_003378	0.37	+2.1
3,800,332	+		ABIE53_003378	0.37	+2.4
3,800,332	+		ABIE53_003378	0.37	+2.6
3,800,332	+		ABIE53_003378	0.37	-0.8
3,800,332	+		ABIE53_003378	0.37	-2.1
3,800,333	-		ABIE53_003378	0.37	+1.2
3,800,333	-		ABIE53_003378	0.37	+0.2
3,800,333	-		ABIE53_003378	0.37	+2.5
3,800,333	-		ABIE53_003378	0.37	-0.6
3,800,333	-		ABIE53_003378	0.37	+2.4
3,800,495	-		ABIE53_003378	0.68	+5.6
3,800,495	-		ABIE53_003378	0.68	+0.8
3,800,495	-		ABIE53_003378	0.68	-1.6
3,800,495	-		ABIE53_003378	0.68	+2.3
3,800,523	+		ABIE53_003378	0.74	+3.5
3,800,523	+		ABIE53_003378	0.74	+2.4
3,800,621	+				+2.8
3,800,657	+				+0.6
3,800,658	-				-1.4
3,800,679	+				+2.4
3,800,679	+				+1.0
3,800,679	+				+2.2
3,800,689	+				-2.3
3,800,690	-				-1.5
3,800,709	-				-0.9
3,800,751	+				+2.6
3,800,751	+				+1.0
3,800,751	+				+3.9
3,800,751	+				+0.4
3,800,751	+				+1.3
3,800,751	+				+0.8
3,800,751	+				-0.3
3,800,751	+				+0.7
3,800,752	-				-0.8
3,800,752	-				-3.4
3,800,752	-				+0.1
3,800,752	-				-0.2
3,800,752	-				-0.2
3,800,761	+				+1.0
3,800,763	+				+0.9
3,800,763	+				-1.7
3,800,763	+				-0.5
3,800,764	-				+0.7
3,800,764	-				-1.9
3,800,764	-				-1.0
3,800,764	-				-1.6
3,800,764	-				-1.9
3,800,931	-		ABIE53_003379	0.23	+0.5
3,800,962	-		ABIE53_003379	0.27	-0.9
3,800,962	-		ABIE53_003379	0.27	-0.6
3,800,962	-		ABIE53_003379	0.27	-1.7
3,800,962	-		ABIE53_003379	0.27	-1.9
3,801,006	+		ABIE53_003379	0.34	+0.8
3,801,007	-		ABIE53_003379	0.34	-1.7
3,801,106	+		ABIE53_003379	0.50	-0.0
3,801,107	-		ABIE53_003379	0.50	-0.0
3,801,107	-		ABIE53_003379	0.50	-1.2
3,801,107	-		ABIE53_003379	0.50	+0.5
3,801,107	-		ABIE53_003379	0.50	+0.1
3,801,117	+		ABIE53_003379	0.52	+0.1
3,801,117	+		ABIE53_003379	0.52	-0.2
3,801,117	+		ABIE53_003379	0.52	-1.3
3,801,117	+		ABIE53_003379	0.52	+2.6
3,801,118	-		ABIE53_003379	0.52	+0.6
3,801,118	-		ABIE53_003379	0.52	-1.4
3,801,118	-		ABIE53_003379	0.52	-0.0
3,801,118	-		ABIE53_003379	0.52	+0.3
3,801,118	-		ABIE53_003379	0.52	-0.1
3,801,272	+		ABIE53_003379	0.76	-1.4
3,801,272	+		ABIE53_003379	0.76	+0.9
3,801,273	-		ABIE53_003379	0.76	+0.6
3,801,273	-		ABIE53_003379	0.76	+1.0
3,801,337	-		ABIE53_003379	0.86	-0.1
3,801,337	-		ABIE53_003379	0.86	+0.5
3,801,440	+				+0.5
3,801,548	+				-0.0
3,801,548	+				-0.9
3,801,548	+				-1.7
3,801,548	+				-0.7
3,801,548	+				+1.3
3,801,549	-				-1.1
3,801,549	-				+1.0
3,801,549	-				-1.0
3,801,549	-				+2.6
3,801,552	+				+0.6
3,801,552	+				-0.6
3,801,552	+				+1.1
3,801,552	+				-1.4
3,801,552	+				-1.0
3,801,552	+				-1.1
3,801,552	+				+1.3
3,801,552	+				-0.3
3,801,552	+				-2.2
3,801,552	+				-0.1
3,801,553	-				-0.7
3,801,553	-				+0.5
3,801,553	-				-0.2
3,801,553	-				-0.6
3,801,553	-				-3.0
3,801,553	-				-3.4
3,801,553	-				-0.6
3,801,553	-				-2.1
3,801,695	+		ABIE53_003380	0.19	+0.5
3,801,695	+		ABIE53_003380	0.19	-1.0
3,801,696	-		ABIE53_003380	0.19	+1.6
3,801,696	-		ABIE53_003380	0.19	-2.1
3,801,746	+		ABIE53_003380	0.23	+1.3
3,801,747	-		ABIE53_003380	0.23	+3.2
3,801,861	+		ABIE53_003380	0.32	-0.7
3,801,861	+		ABIE53_003380	0.32	+0.3
3,801,861	+		ABIE53_003380	0.32	-0.7
3,801,861	+		ABIE53_003380	0.32	-1.3
3,801,861	+		ABIE53_003380	0.32	+0.5
3,801,861	+		ABIE53_003380	0.32	-2.1
3,801,862	-		ABIE53_003380	0.32	+1.6
3,801,862	-		ABIE53_003380	0.32	+1.0
3,801,987	+		ABIE53_003380	0.42	-0.7
3,801,988	-		ABIE53_003380	0.42	-0.6
3,801,999	+		ABIE53_003380	0.43	+0.5
3,801,999	+		ABIE53_003380	0.43	-0.7
3,801,999	+		ABIE53_003380	0.43	-1.1
3,801,999	+		ABIE53_003380	0.43	-1.7
3,802,119	+		ABIE53_003380	0.53	+0.1
3,802,119	+		ABIE53_003380	0.53	+0.6
3,802,137	+		ABIE53_003380	0.54	+0.6
3,802,137	+		ABIE53_003380	0.54	+0.3
3,802,137	+		ABIE53_003380	0.54	-3.8
3,802,137	+		ABIE53_003380	0.54	-1.1
3,802,137	+		ABIE53_003380	0.54	-0.3
3,802,137	+		ABIE53_003380	0.54	+0.7
3,802,138	-		ABIE53_003380	0.54	+0.4
3,802,138	-		ABIE53_003380	0.54	-2.2
3,802,138	-		ABIE53_003380	0.54	+0.4
3,802,138	-		ABIE53_003380	0.54	+3.0
3,802,138	-		ABIE53_003380	0.54	+2.6
3,802,138	-		ABIE53_003380	0.54	-0.5
3,802,138	-		ABIE53_003380	0.54	-0.3
3,802,138	-		ABIE53_003380	0.54	+0.9
3,802,138	-		ABIE53_003380	0.54	-0.6
3,802,138	-		ABIE53_003380	0.54	+2.6
3,802,138	-		ABIE53_003380	0.54	-0.0
3,802,138	-		ABIE53_003380	0.54	-1.0
3,802,138	-		ABIE53_003380	0.54	-0.1
3,802,138	-		ABIE53_003380	0.54	-1.1
3,802,138	-		ABIE53_003380	0.54	+2.6
3,802,138	-		ABIE53_003380	0.54	-2.5
3,802,138	-		ABIE53_003380	0.54	+0.0
3,802,138	-		ABIE53_003380	0.54	+0.3
3,802,138	-		ABIE53_003380	0.54	-1.1
3,802,143	+		ABIE53_003380	0.54	-1.5
3,802,143	+		ABIE53_003380	0.54	-1.0
3,802,143	+		ABIE53_003380	0.54	-0.6
3,802,143	+		ABIE53_003380	0.54	-0.7
3,802,143	+		ABIE53_003380	0.54	+1.1
3,802,143	+		ABIE53_003380	0.54	+2.6
3,802,143	+		ABIE53_003380	0.54	+0.8
3,802,144	-		ABIE53_003380	0.55	+0.6
3,802,144	-		ABIE53_003380	0.55	-0.1
3,802,144	-		ABIE53_003380	0.55	-0.1
3,802,144	-		ABIE53_003380	0.55	-1.7
3,802,144	-		ABIE53_003380	0.55	+1.0
3,802,202	+		ABIE53_003380	0.59	+2.6
3,802,202	+		ABIE53_003380	0.59	+0.0
3,802,203	-		ABIE53_003380	0.59	-1.5
3,802,266	+		ABIE53_003380	0.64	-2.7
3,802,266	+		ABIE53_003380	0.64	-0.4
3,802,267	-		ABIE53_003380	0.64	-2.4
3,802,267	-		ABIE53_003380	0.64	+1.8
3,802,293	+		ABIE53_003380	0.66	+0.4
3,802,294	-		ABIE53_003380	0.67	-1.1
3,802,294	-		ABIE53_003380	0.67	-0.1
3,802,412	+		ABIE53_003380	0.76	-0.7
3,802,413	-		ABIE53_003380	0.76	+1.6
3,802,413	-		ABIE53_003380	0.76	-1.2