Experiment: Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23205 and BWI76_RS23210 are separated by 148 nucleotides BWI76_RS23210 and BWI76_RS23215 are separated by 17 nucleotides
BWI76_RS23205: BWI76_RS23205 - propanediol utilization protein PduX, at 4,833,488 to 4,834,354
_RS23205
BWI76_RS23210: BWI76_RS23210 - threonine-phosphate decarboxylase, at 4,834,503 to 4,835,582
_RS23210
BWI76_RS23215: BWI76_RS23215 - N-acetylmuramoyl-L-alanine amidase, at 4,835,600 to 4,836,853
_RS23215
Position (kb)
4834
4835
4836 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4833.580 kb on + strand, within BWI76_RS23205 at 4833.670 kb on + strand, within BWI76_RS23205 at 4833.745 kb on + strand, within BWI76_RS23205 at 4833.863 kb on - strand, within BWI76_RS23205 at 4833.887 kb on + strand, within BWI76_RS23205 at 4834.041 kb on - strand, within BWI76_RS23205 at 4834.336 kb on - strand at 4834.338 kb on + strand at 4834.340 kb on + strand at 4834.346 kb on - strand at 4834.348 kb on + strand at 4834.348 kb on + strand at 4834.536 kb on - strand at 4834.599 kb on - strand at 4834.697 kb on + strand, within BWI76_RS23210 at 4834.701 kb on + strand, within BWI76_RS23210 at 4835.216 kb on + strand, within BWI76_RS23210 at 4835.408 kb on + strand, within BWI76_RS23210 at 4835.566 kb on + strand at 4835.602 kb on + strand at 4835.665 kb on - strand at 4835.717 kb on - strand at 4835.733 kb on + strand, within BWI76_RS23215 at 4835.954 kb on + strand, within BWI76_RS23215 at 4835.969 kb on - strand, within BWI76_RS23215 at 4836.066 kb on + strand, within BWI76_RS23215 at 4836.246 kb on + strand, within BWI76_RS23215 at 4836.329 kb on + strand, within BWI76_RS23215 at 4836.364 kb on - strand, within BWI76_RS23215 at 4836.448 kb on + strand, within BWI76_RS23215 at 4836.448 kb on + strand, within BWI76_RS23215 at 4836.499 kb on + strand, within BWI76_RS23215
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM remove 4,833,580 + BWI76_RS23205 0.11 -0.3 4,833,670 + BWI76_RS23205 0.21 -0.1 4,833,745 + BWI76_RS23205 0.30 -1.1 4,833,863 - BWI76_RS23205 0.43 +0.9 4,833,887 + BWI76_RS23205 0.46 -0.1 4,834,041 - BWI76_RS23205 0.64 +0.9 4,834,336 - +1.7 4,834,338 + -0.8 4,834,340 + +0.1 4,834,346 - -0.2 4,834,348 + -0.7 4,834,348 + +0.1 4,834,536 - +0.8 4,834,599 - +0.7 4,834,697 + BWI76_RS23210 0.18 +1.1 4,834,701 + BWI76_RS23210 0.18 +0.8 4,835,216 + BWI76_RS23210 0.66 +1.2 4,835,408 + BWI76_RS23210 0.84 +1.1 4,835,566 + -1.1 4,835,602 + +2.5 4,835,665 - +1.2 4,835,717 - +0.3 4,835,733 + BWI76_RS23215 0.11 -0.3 4,835,954 + BWI76_RS23215 0.28 -0.1 4,835,969 - BWI76_RS23215 0.29 -0.8 4,836,066 + BWI76_RS23215 0.37 +0.2 4,836,246 + BWI76_RS23215 0.52 +1.2 4,836,329 + BWI76_RS23215 0.58 +1.1 4,836,364 - BWI76_RS23215 0.61 -0.1 4,836,448 + BWI76_RS23215 0.68 -3.0 4,836,448 + BWI76_RS23215 0.68 -2.1 4,836,499 + BWI76_RS23215 0.72 +0.7
Or see this region's nucleotide sequence