Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS23210

Experiment: Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS23205 and BWI76_RS23210 are separated by 148 nucleotidesBWI76_RS23210 and BWI76_RS23215 are separated by 17 nucleotides BWI76_RS23205: BWI76_RS23205 - propanediol utilization protein PduX, at 4,833,488 to 4,834,354 _RS23205 BWI76_RS23210: BWI76_RS23210 - threonine-phosphate decarboxylase, at 4,834,503 to 4,835,582 _RS23210 BWI76_RS23215: BWI76_RS23215 - N-acetylmuramoyl-L-alanine amidase, at 4,835,600 to 4,836,853 _RS23215 Position (kb) 4834 4835 4836Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4833.580 kb on + strand, within BWI76_RS23205at 4833.670 kb on + strand, within BWI76_RS23205at 4833.745 kb on + strand, within BWI76_RS23205at 4833.863 kb on - strand, within BWI76_RS23205at 4833.887 kb on + strand, within BWI76_RS23205at 4834.041 kb on - strand, within BWI76_RS23205at 4834.336 kb on - strandat 4834.338 kb on + strandat 4834.340 kb on + strandat 4834.346 kb on - strandat 4834.348 kb on + strandat 4834.348 kb on + strandat 4834.536 kb on - strandat 4834.599 kb on - strandat 4834.697 kb on + strand, within BWI76_RS23210at 4834.701 kb on + strand, within BWI76_RS23210at 4835.216 kb on + strand, within BWI76_RS23210at 4835.408 kb on + strand, within BWI76_RS23210at 4835.566 kb on + strandat 4835.602 kb on + strandat 4835.665 kb on - strandat 4835.717 kb on - strandat 4835.733 kb on + strand, within BWI76_RS23215at 4835.954 kb on + strand, within BWI76_RS23215at 4835.969 kb on - strand, within BWI76_RS23215at 4836.066 kb on + strand, within BWI76_RS23215at 4836.246 kb on + strand, within BWI76_RS23215at 4836.329 kb on + strand, within BWI76_RS23215at 4836.364 kb on - strand, within BWI76_RS23215at 4836.448 kb on + strand, within BWI76_RS23215at 4836.448 kb on + strand, within BWI76_RS23215at 4836.499 kb on + strand, within BWI76_RS23215

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM
remove
4,833,580 + BWI76_RS23205 0.11 -0.3
4,833,670 + BWI76_RS23205 0.21 -0.1
4,833,745 + BWI76_RS23205 0.30 -1.1
4,833,863 - BWI76_RS23205 0.43 +0.9
4,833,887 + BWI76_RS23205 0.46 -0.1
4,834,041 - BWI76_RS23205 0.64 +0.9
4,834,336 - +1.7
4,834,338 + -0.8
4,834,340 + +0.1
4,834,346 - -0.2
4,834,348 + -0.7
4,834,348 + +0.1
4,834,536 - +0.8
4,834,599 - +0.7
4,834,697 + BWI76_RS23210 0.18 +1.1
4,834,701 + BWI76_RS23210 0.18 +0.8
4,835,216 + BWI76_RS23210 0.66 +1.2
4,835,408 + BWI76_RS23210 0.84 +1.1
4,835,566 + -1.1
4,835,602 + +2.5
4,835,665 - +1.2
4,835,717 - +0.3
4,835,733 + BWI76_RS23215 0.11 -0.3
4,835,954 + BWI76_RS23215 0.28 -0.1
4,835,969 - BWI76_RS23215 0.29 -0.8
4,836,066 + BWI76_RS23215 0.37 +0.2
4,836,246 + BWI76_RS23215 0.52 +1.2
4,836,329 + BWI76_RS23215 0.58 +1.1
4,836,364 - BWI76_RS23215 0.61 -0.1
4,836,448 + BWI76_RS23215 0.68 -3.0
4,836,448 + BWI76_RS23215 0.68 -2.1
4,836,499 + BWI76_RS23215 0.72 +0.7

Or see this region's nucleotide sequence