Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16435

Experiment: Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16430 and BWI76_RS16435 are separated by 41 nucleotidesBWI76_RS16435 and BWI76_RS16440 are separated by 171 nucleotidesBWI76_RS16440 and BWI76_RS16445 are separated by 10 nucleotides BWI76_RS16430: BWI76_RS16430 - GGDEF domain-containing protein, at 3,408,369 to 3,409,721 _RS16430 BWI76_RS16435: BWI76_RS16435 - SlyA family transcriptional regulator, at 3,409,763 to 3,410,203 _RS16435 BWI76_RS16440: BWI76_RS16440 - DUF1656 domain-containing protein, at 3,410,375 to 3,410,611 _RS16440 BWI76_RS16445: BWI76_RS16445 - auxiliary transporter membrane fusion protein, at 3,410,622 to 3,411,518 _RS16445 Position (kb) 3409 3410 3411Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 3408.776 kb on - strand, within BWI76_RS16430at 3408.776 kb on - strand, within BWI76_RS16430at 3408.776 kb on - strand, within BWI76_RS16430at 3408.776 kb on - strand, within BWI76_RS16430at 3408.793 kb on + strand, within BWI76_RS16430at 3408.793 kb on + strand, within BWI76_RS16430at 3408.793 kb on + strand, within BWI76_RS16430at 3408.795 kb on - strand, within BWI76_RS16430at 3408.801 kb on - strand, within BWI76_RS16430at 3408.830 kb on - strand, within BWI76_RS16430at 3408.830 kb on - strand, within BWI76_RS16430at 3408.830 kb on - strand, within BWI76_RS16430at 3408.865 kb on - strand, within BWI76_RS16430at 3408.886 kb on + strand, within BWI76_RS16430at 3408.909 kb on - strand, within BWI76_RS16430at 3408.909 kb on - strand, within BWI76_RS16430at 3408.931 kb on + strand, within BWI76_RS16430at 3408.931 kb on + strandat 3408.939 kb on - strand, within BWI76_RS16430at 3408.939 kb on - strand, within BWI76_RS16430at 3408.939 kb on - strand, within BWI76_RS16430at 3409.004 kb on + strand, within BWI76_RS16430at 3409.063 kb on + strand, within BWI76_RS16430at 3409.083 kb on + strand, within BWI76_RS16430at 3409.083 kb on + strand, within BWI76_RS16430at 3409.083 kb on + strand, within BWI76_RS16430at 3409.083 kb on + strand, within BWI76_RS16430at 3409.083 kb on + strand, within BWI76_RS16430at 3409.083 kb on + strand, within BWI76_RS16430at 3409.088 kb on + strand, within BWI76_RS16430at 3409.096 kb on + strand, within BWI76_RS16430at 3409.096 kb on + strand, within BWI76_RS16430at 3409.098 kb on + strand, within BWI76_RS16430at 3409.101 kb on + strandat 3409.101 kb on + strand, within BWI76_RS16430at 3409.103 kb on + strand, within BWI76_RS16430at 3409.115 kb on + strand, within BWI76_RS16430at 3409.115 kb on + strand, within BWI76_RS16430at 3409.115 kb on + strand, within BWI76_RS16430at 3409.117 kb on + strand, within BWI76_RS16430at 3409.138 kb on + strand, within BWI76_RS16430at 3409.196 kb on - strand, within BWI76_RS16430at 3409.220 kb on + strand, within BWI76_RS16430at 3409.259 kb on - strand, within BWI76_RS16430at 3409.259 kb on - strand, within BWI76_RS16430at 3409.387 kb on + strand, within BWI76_RS16430at 3409.597 kb on + strandat 3409.605 kb on - strandat 3409.719 kb on - strandat 3410.839 kb on - strand, within BWI76_RS16445at 3411.160 kb on + strand, within BWI76_RS16445at 3411.200 kb on - strand, within BWI76_RS16445

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM
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3,408,776 - BWI76_RS16430 0.30 -1.9
3,408,776 - BWI76_RS16430 0.30 +1.4
3,408,776 - BWI76_RS16430 0.30 -1.1
3,408,776 - BWI76_RS16430 0.30 -0.7
3,408,793 + BWI76_RS16430 0.31 -2.7
3,408,793 + BWI76_RS16430 0.31 -2.1
3,408,793 + BWI76_RS16430 0.31 +0.7
3,408,795 - BWI76_RS16430 0.31 +0.9
3,408,801 - BWI76_RS16430 0.32 -0.2
3,408,830 - BWI76_RS16430 0.34 -2.3
3,408,830 - BWI76_RS16430 0.34 -1.7
3,408,830 - BWI76_RS16430 0.34 -0.8
3,408,865 - BWI76_RS16430 0.37 +0.9
3,408,886 + BWI76_RS16430 0.38 -2.1
3,408,909 - BWI76_RS16430 0.40 -1.4
3,408,909 - BWI76_RS16430 0.40 +1.6
3,408,931 + BWI76_RS16430 0.42 +0.5
3,408,931 + +4.2
3,408,939 - BWI76_RS16430 0.42 +0.9
3,408,939 - BWI76_RS16430 0.42 -2.1
3,408,939 - BWI76_RS16430 0.42 -0.5
3,409,004 + BWI76_RS16430 0.47 -0.4
3,409,063 + BWI76_RS16430 0.51 -0.1
3,409,083 + BWI76_RS16430 0.53 -0.4
3,409,083 + BWI76_RS16430 0.53 -3.7
3,409,083 + BWI76_RS16430 0.53 +0.2
3,409,083 + BWI76_RS16430 0.53 -1.1
3,409,083 + BWI76_RS16430 0.53 -3.0
3,409,083 + BWI76_RS16430 0.53 -0.7
3,409,088 + BWI76_RS16430 0.53 -1.9
3,409,096 + BWI76_RS16430 0.54 +0.9
3,409,096 + BWI76_RS16430 0.54 -2.1
3,409,098 + BWI76_RS16430 0.54 +1.1
3,409,101 + +0.9
3,409,101 + BWI76_RS16430 0.54 -1.9
3,409,103 + BWI76_RS16430 0.54 -0.1
3,409,115 + BWI76_RS16430 0.55 -4.3
3,409,115 + BWI76_RS16430 0.55 +0.5
3,409,115 + BWI76_RS16430 0.55 -0.7
3,409,117 + BWI76_RS16430 0.55 +1.4
3,409,138 + BWI76_RS16430 0.57 +0.4
3,409,196 - BWI76_RS16430 0.61 +1.3
3,409,220 + BWI76_RS16430 0.63 +0.2
3,409,259 - BWI76_RS16430 0.66 +1.0
3,409,259 - BWI76_RS16430 0.66 -0.2
3,409,387 + BWI76_RS16430 0.75 +0.2
3,409,597 + +1.1
3,409,605 - -0.8
3,409,719 - -2.4
3,410,839 - BWI76_RS16445 0.24 -2.0
3,411,160 + BWI76_RS16445 0.60 +1.1
3,411,200 - BWI76_RS16445 0.64 -0.1

Or see this region's nucleotide sequence