Experiment: Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16130 and BWI76_RS16135 are separated by 9 nucleotides BWI76_RS16135 and BWI76_RS16140 are separated by 10 nucleotides BWI76_RS16140 and BWI76_RS16145 are separated by 10 nucleotides
BWI76_RS16130: BWI76_RS16130 - 3-carboxy-cis,cis-muconate cycloisomerase, at 3,346,388 to 3,347,740
_RS16130
BWI76_RS16135: BWI76_RS16135 - acetyl-CoA acetyltransferase, at 3,347,750 to 3,348,952
_RS16135
BWI76_RS16140: BWI76_RS16140 - 3-oxoadipate CoA-transferase, at 3,348,963 to 3,349,619
_RS16140
BWI76_RS16145: BWI76_RS16145 - 3-oxoadipate CoA-transferase, at 3,349,630 to 3,350,316
_RS16145
Position (kb)
3347
3348
3349 Strain fitness (log2 ratio)
-2
-1
0
1 at 3346.851 kb on + strand, within BWI76_RS16130 at 3347.026 kb on - strand, within BWI76_RS16130 at 3347.070 kb on - strand, within BWI76_RS16130 at 3347.259 kb on - strand, within BWI76_RS16130 at 3347.785 kb on - strand at 3347.918 kb on + strand, within BWI76_RS16135 at 3347.941 kb on + strand, within BWI76_RS16135 at 3347.949 kb on - strand, within BWI76_RS16135 at 3348.604 kb on - strand, within BWI76_RS16135 at 3349.004 kb on + strand at 3349.401 kb on - strand, within BWI76_RS16140 at 3349.411 kb on + strand, within BWI76_RS16140
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM remove 3,346,851 + BWI76_RS16130 0.34 -2.7 3,347,026 - BWI76_RS16130 0.47 -2.3 3,347,070 - BWI76_RS16130 0.50 +0.3 3,347,259 - BWI76_RS16130 0.64 +0.4 3,347,785 - +0.7 3,347,918 + BWI76_RS16135 0.14 +1.2 3,347,941 + BWI76_RS16135 0.16 +0.8 3,347,949 - BWI76_RS16135 0.17 +0.7 3,348,604 - BWI76_RS16135 0.71 +1.0 3,349,004 + -0.6 3,349,401 - BWI76_RS16140 0.67 +0.8 3,349,411 + BWI76_RS16140 0.68 +0.2
Or see this region's nucleotide sequence