Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS14180

Experiment: Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS14175 and BWI76_RS14180 overlap by 4 nucleotidesBWI76_RS14180 and BWI76_RS14185 are separated by 1 nucleotidesBWI76_RS14185 and BWI76_RS14190 overlap by 4 nucleotides BWI76_RS14175: BWI76_RS14175 - dehydrogenase, at 2,967,077 to 2,967,952 _RS14175 BWI76_RS14180: BWI76_RS14180 - hypothetical protein, at 2,967,949 to 2,969,034 _RS14180 BWI76_RS14185: BWI76_RS14185 - 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase, at 2,969,036 to 2,969,749 _RS14185 BWI76_RS14190: BWI76_RS14190 - DNA-binding protein, at 2,969,746 to 2,970,486 _RS14190 Position (kb) 2967 2968 2969 2970Strain fitness (log2 ratio) -2 -1 0 1at 2966.979 kb on + strandat 2966.979 kb on + strandat 2967.034 kb on - strandat 2967.036 kb on + strandat 2967.075 kb on + strandat 2967.075 kb on + strandat 2967.123 kb on + strandat 2967.147 kb on - strandat 2967.156 kb on + strandat 2967.220 kb on - strand, within BWI76_RS14175at 2967.277 kb on + strandat 2967.285 kb on - strand, within BWI76_RS14175at 2967.335 kb on - strand, within BWI76_RS14175at 2967.571 kb on + strand, within BWI76_RS14175at 2967.579 kb on - strand, within BWI76_RS14175at 2967.708 kb on - strand, within BWI76_RS14175at 2968.229 kb on - strand, within BWI76_RS14180at 2968.331 kb on - strand, within BWI76_RS14180at 2968.336 kb on - strand, within BWI76_RS14180at 2968.401 kb on - strand, within BWI76_RS14180at 2968.507 kb on - strand, within BWI76_RS14180at 2968.519 kb on + strand, within BWI76_RS14180at 2968.603 kb on - strand, within BWI76_RS14180at 2968.694 kb on - strand, within BWI76_RS14180at 2968.955 kb on + strandat 2969.534 kb on - strand, within BWI76_RS14185at 2969.563 kb on - strand, within BWI76_RS14185at 2969.593 kb on - strand, within BWI76_RS14185at 2969.593 kb on - strandat 2969.593 kb on - strand, within BWI76_RS14185at 2969.599 kb on - strand, within BWI76_RS14185at 2969.670 kb on + strand, within BWI76_RS14185at 2969.712 kb on - strandat 2969.992 kb on - strand, within BWI76_RS14190

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM
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2,966,979 + +0.0
2,966,979 + -1.9
2,967,034 - -0.2
2,967,036 + +1.4
2,967,075 + +0.9
2,967,075 + -0.9
2,967,123 + +0.9
2,967,147 - +0.7
2,967,156 + +1.5
2,967,220 - BWI76_RS14175 0.16 -0.7
2,967,277 + -2.1
2,967,285 - BWI76_RS14175 0.24 +0.6
2,967,335 - BWI76_RS14175 0.29 +0.6
2,967,571 + BWI76_RS14175 0.56 -0.4
2,967,579 - BWI76_RS14175 0.57 -0.1
2,967,708 - BWI76_RS14175 0.72 -1.3
2,968,229 - BWI76_RS14180 0.26 -0.3
2,968,331 - BWI76_RS14180 0.35 +0.0
2,968,336 - BWI76_RS14180 0.36 +0.1
2,968,401 - BWI76_RS14180 0.42 -0.9
2,968,507 - BWI76_RS14180 0.51 -0.1
2,968,519 + BWI76_RS14180 0.52 +0.4
2,968,603 - BWI76_RS14180 0.60 -0.1
2,968,694 - BWI76_RS14180 0.69 -1.0
2,968,955 + +0.7
2,969,534 - BWI76_RS14185 0.70 -0.1
2,969,563 - BWI76_RS14185 0.74 +1.1
2,969,593 - BWI76_RS14185 0.78 +0.2
2,969,593 - +0.9
2,969,593 - BWI76_RS14185 0.78 -0.1
2,969,599 - BWI76_RS14185 0.79 -0.2
2,969,670 + BWI76_RS14185 0.89 +0.3
2,969,712 - +0.1
2,969,992 - BWI76_RS14190 0.33 -0.9

Or see this region's nucleotide sequence