Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS14160

Experiment: Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS14155 and BWI76_RS14160 are separated by 11 nucleotidesBWI76_RS14160 and BWI76_RS14165 are separated by 243 nucleotides BWI76_RS14155: BWI76_RS14155 - transketolase, at 2,961,519 to 2,962,538 _RS14155 BWI76_RS14160: BWI76_RS14160 - ABC transporter substrate-binding protein, at 2,962,550 to 2,963,512 _RS14160 BWI76_RS14165: BWI76_RS14165 - trans-acting regulatory protein of aco operon, at 2,963,756 to 2,966,509 _RS14165 Position (kb) 2962 2963 2964Strain fitness (log2 ratio) -3 -2 -1 0 1at 2961.600 kb on - strandat 2961.600 kb on - strandat 2961.602 kb on + strandat 2962.064 kb on + strand, within BWI76_RS14155at 2962.351 kb on - strand, within BWI76_RS14155at 2962.356 kb on - strand, within BWI76_RS14155at 2962.457 kb on - strandat 2962.690 kb on - strand, within BWI76_RS14160at 2962.964 kb on + strand, within BWI76_RS14160at 2963.020 kb on - strand, within BWI76_RS14160at 2963.198 kb on - strand, within BWI76_RS14160at 2963.241 kb on + strand, within BWI76_RS14160at 2963.375 kb on + strand, within BWI76_RS14160at 2963.388 kb on + strand, within BWI76_RS14160at 2963.481 kb on + strandat 2963.481 kb on + strandat 2963.557 kb on + strandat 2963.826 kb on - strandat 2964.005 kb on - strandat 2964.137 kb on - strand, within BWI76_RS14165at 2964.246 kb on - strand, within BWI76_RS14165at 2964.290 kb on - strand, within BWI76_RS14165at 2964.461 kb on - strand, within BWI76_RS14165

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM
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2,961,600 - +0.5
2,961,600 - +0.2
2,961,602 + -0.2
2,962,064 + BWI76_RS14155 0.53 -0.4
2,962,351 - BWI76_RS14155 0.82 +0.2
2,962,356 - BWI76_RS14155 0.82 -1.1
2,962,457 - -1.0
2,962,690 - BWI76_RS14160 0.15 -1.4
2,962,964 + BWI76_RS14160 0.43 -0.5
2,963,020 - BWI76_RS14160 0.49 -2.8
2,963,198 - BWI76_RS14160 0.67 -0.3
2,963,241 + BWI76_RS14160 0.72 +0.1
2,963,375 + BWI76_RS14160 0.86 -0.6
2,963,388 + BWI76_RS14160 0.87 -1.7
2,963,481 + +0.6
2,963,481 + +0.0
2,963,557 + -0.6
2,963,826 - -0.2
2,964,005 - +0.1
2,964,137 - BWI76_RS14165 0.14 -1.9
2,964,246 - BWI76_RS14165 0.18 +1.3
2,964,290 - BWI76_RS14165 0.19 -0.7
2,964,461 - BWI76_RS14165 0.26 +1.1

Or see this region's nucleotide sequence