Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS12645

Experiment: Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS12635 and BWI76_RS12640 are separated by 216 nucleotidesBWI76_RS12640 and BWI76_RS12645 are separated by 125 nucleotidesBWI76_RS12645 and BWI76_RS12650 are separated by 199 nucleotidesBWI76_RS12650 and BWI76_RS12655 are separated by 56 nucleotides BWI76_RS12635: BWI76_RS12635 - cold-shock protein, at 2,637,768 to 2,637,956 _RS12635 BWI76_RS12640: BWI76_RS12640 - hypothetical protein, at 2,638,173 to 2,638,802 _RS12640 BWI76_RS12645: BWI76_RS12645 - membrane protein, at 2,638,928 to 2,639,509 _RS12645 BWI76_RS12650: BWI76_RS12650 - membrane protein, at 2,639,709 to 2,640,272 _RS12650 BWI76_RS12655: BWI76_RS12655 - PTS cellobiose transporter subunit IIB, at 2,640,329 to 2,640,631 _RS12655 Position (kb) 2638 2639 2640Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2638.023 kb on + strandat 2638.094 kb on - strandat 2638.097 kb on + strandat 2638.173 kb on + strandat 2638.214 kb on + strandat 2638.214 kb on + strandat 2638.285 kb on - strand, within BWI76_RS12640at 2638.337 kb on + strand, within BWI76_RS12640at 2638.344 kb on + strand, within BWI76_RS12640at 2638.352 kb on - strand, within BWI76_RS12640at 2638.352 kb on - strand, within BWI76_RS12640at 2638.352 kb on - strand, within BWI76_RS12640at 2638.401 kb on - strand, within BWI76_RS12640at 2638.423 kb on + strand, within BWI76_RS12640at 2638.423 kb on + strand, within BWI76_RS12640at 2638.436 kb on + strand, within BWI76_RS12640at 2638.450 kb on + strand, within BWI76_RS12640at 2638.458 kb on - strand, within BWI76_RS12640at 2638.458 kb on - strandat 2638.546 kb on - strand, within BWI76_RS12640at 2638.594 kb on - strand, within BWI76_RS12640at 2638.638 kb on - strand, within BWI76_RS12640at 2639.007 kb on - strand, within BWI76_RS12645at 2639.008 kb on - strand, within BWI76_RS12645at 2639.039 kb on + strand, within BWI76_RS12645at 2639.045 kb on + strand, within BWI76_RS12645at 2639.050 kb on + strand, within BWI76_RS12645at 2639.089 kb on + strand, within BWI76_RS12645at 2639.125 kb on + strand, within BWI76_RS12645at 2639.185 kb on + strand, within BWI76_RS12645at 2639.244 kb on + strand, within BWI76_RS12645at 2639.244 kb on + strand, within BWI76_RS12645at 2639.244 kb on + strand, within BWI76_RS12645at 2639.244 kb on + strand, within BWI76_RS12645at 2639.244 kb on + strand, within BWI76_RS12645at 2639.252 kb on - strand, within BWI76_RS12645at 2639.252 kb on - strand, within BWI76_RS12645at 2639.252 kb on - strand, within BWI76_RS12645at 2639.252 kb on - strand, within BWI76_RS12645at 2639.252 kb on - strand, within BWI76_RS12645at 2639.252 kb on - strand, within BWI76_RS12645at 2639.285 kb on + strand, within BWI76_RS12645at 2639.290 kb on + strand, within BWI76_RS12645at 2639.320 kb on - strand, within BWI76_RS12645at 2639.367 kb on + strand, within BWI76_RS12645at 2639.403 kb on + strand, within BWI76_RS12645at 2639.403 kb on - strand, within BWI76_RS12645at 2639.419 kb on + strand, within BWI76_RS12645at 2639.450 kb on + strand, within BWI76_RS12645at 2639.458 kb on - strandat 2639.468 kb on + strandat 2639.472 kb on + strandat 2639.480 kb on - strandat 2639.482 kb on + strandat 2639.565 kb on + strandat 2639.578 kb on - strandat 2639.598 kb on - strandat 2639.664 kb on + strandat 2639.740 kb on + strandat 2639.743 kb on - strandat 2639.745 kb on + strandat 2639.761 kb on + strandat 2639.828 kb on - strand, within BWI76_RS12650at 2639.916 kb on + strand, within BWI76_RS12650at 2639.924 kb on + strand, within BWI76_RS12650at 2639.924 kb on + strand, within BWI76_RS12650at 2639.925 kb on + strand, within BWI76_RS12650at 2639.925 kb on + strand, within BWI76_RS12650at 2639.925 kb on + strand, within BWI76_RS12650at 2639.943 kb on + strand, within BWI76_RS12650at 2639.953 kb on + strand, within BWI76_RS12650at 2640.187 kb on + strand, within BWI76_RS12650at 2640.210 kb on + strand, within BWI76_RS12650at 2640.220 kb on + strandat 2640.226 kb on + strandat 2640.227 kb on + strandat 2640.249 kb on + strandat 2640.280 kb on + strandat 2640.349 kb on - strandat 2640.352 kb on + strandat 2640.360 kb on - strand, within BWI76_RS12655at 2640.369 kb on - strand, within BWI76_RS12655at 2640.394 kb on - strand, within BWI76_RS12655at 2640.410 kb on + strand, within BWI76_RS12655at 2640.410 kb on + strand, within BWI76_RS12655at 2640.410 kb on + strand, within BWI76_RS12655at 2640.410 kb on + strand, within BWI76_RS12655at 2640.418 kb on + strand, within BWI76_RS12655at 2640.418 kb on - strand, within BWI76_RS12655at 2640.418 kb on - strand, within BWI76_RS12655at 2640.418 kb on - strand, within BWI76_RS12655at 2640.418 kb on - strand, within BWI76_RS12655at 2640.418 kb on - strand, within BWI76_RS12655at 2640.418 kb on - strand, within BWI76_RS12655at 2640.418 kb on - strand, within BWI76_RS12655at 2640.418 kb on - strand, within BWI76_RS12655at 2640.418 kb on - strand, within BWI76_RS12655at 2640.418 kb on - strandat 2640.418 kb on - strand, within BWI76_RS12655at 2640.418 kb on - strand, within BWI76_RS12655at 2640.418 kb on - strand, within BWI76_RS12655at 2640.425 kb on - strand, within BWI76_RS12655at 2640.427 kb on - strand, within BWI76_RS12655at 2640.447 kb on + strand, within BWI76_RS12655at 2640.450 kb on - strandat 2640.455 kb on - strand, within BWI76_RS12655at 2640.455 kb on - strand, within BWI76_RS12655at 2640.455 kb on - strand, within BWI76_RS12655at 2640.455 kb on - strand, within BWI76_RS12655at 2640.455 kb on - strand, within BWI76_RS12655

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM
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2,638,023 + +1.0
2,638,094 - +1.0
2,638,097 + -0.5
2,638,173 + -0.5
2,638,214 + -0.8
2,638,214 + +1.1
2,638,285 - BWI76_RS12640 0.18 -2.5
2,638,337 + BWI76_RS12640 0.26 -1.8
2,638,344 + BWI76_RS12640 0.27 +0.2
2,638,352 - BWI76_RS12640 0.28 -1.3
2,638,352 - BWI76_RS12640 0.28 -1.3
2,638,352 - BWI76_RS12640 0.28 -0.5
2,638,401 - BWI76_RS12640 0.36 +1.6
2,638,423 + BWI76_RS12640 0.40 +0.1
2,638,423 + BWI76_RS12640 0.40 +0.8
2,638,436 + BWI76_RS12640 0.42 -1.8
2,638,450 + BWI76_RS12640 0.44 +1.1
2,638,458 - BWI76_RS12640 0.45 -0.5
2,638,458 - -0.5
2,638,546 - BWI76_RS12640 0.59 -0.9
2,638,594 - BWI76_RS12640 0.67 +0.4
2,638,638 - BWI76_RS12640 0.74 -0.5
2,639,007 - BWI76_RS12645 0.14 +0.2
2,639,008 - BWI76_RS12645 0.14 +1.1
2,639,039 + BWI76_RS12645 0.19 -2.6
2,639,045 + BWI76_RS12645 0.20 +0.2
2,639,050 + BWI76_RS12645 0.21 -3.6
2,639,089 + BWI76_RS12645 0.28 -0.5
2,639,125 + BWI76_RS12645 0.34 -1.6
2,639,185 + BWI76_RS12645 0.44 -2.1
2,639,244 + BWI76_RS12645 0.54 +0.1
2,639,244 + BWI76_RS12645 0.54 +3.2
2,639,244 + BWI76_RS12645 0.54 +0.1
2,639,244 + BWI76_RS12645 0.54 +1.0
2,639,244 + BWI76_RS12645 0.54 +1.1
2,639,252 - BWI76_RS12645 0.56 +0.0
2,639,252 - BWI76_RS12645 0.56 +0.7
2,639,252 - BWI76_RS12645 0.56 +1.6
2,639,252 - BWI76_RS12645 0.56 +0.3
2,639,252 - BWI76_RS12645 0.56 +1.9
2,639,252 - BWI76_RS12645 0.56 +0.7
2,639,285 + BWI76_RS12645 0.61 +0.7
2,639,290 + BWI76_RS12645 0.62 -0.7
2,639,320 - BWI76_RS12645 0.67 +1.8
2,639,367 + BWI76_RS12645 0.75 +1.7
2,639,403 + BWI76_RS12645 0.82 -0.5
2,639,403 - BWI76_RS12645 0.82 -1.5
2,639,419 + BWI76_RS12645 0.84 -2.5
2,639,450 + BWI76_RS12645 0.90 -0.5
2,639,458 - +1.1
2,639,468 + +0.1
2,639,472 + +2.1
2,639,480 - +1.6
2,639,482 + -0.2
2,639,565 + -2.3
2,639,578 - -1.2
2,639,598 - +0.6
2,639,664 + -0.5
2,639,740 + -0.9
2,639,743 - +0.1
2,639,745 + +0.2
2,639,761 + -0.5
2,639,828 - BWI76_RS12650 0.21 -0.5
2,639,916 + BWI76_RS12650 0.37 +0.9
2,639,924 + BWI76_RS12650 0.38 +0.4
2,639,924 + BWI76_RS12650 0.38 +0.3
2,639,925 + BWI76_RS12650 0.38 +0.8
2,639,925 + BWI76_RS12650 0.38 -0.6
2,639,925 + BWI76_RS12650 0.38 -0.5
2,639,943 + BWI76_RS12650 0.41 +0.1
2,639,953 + BWI76_RS12650 0.43 -3.4
2,640,187 + BWI76_RS12650 0.85 -0.5
2,640,210 + BWI76_RS12650 0.89 +1.1
2,640,220 + +0.6
2,640,226 + -0.5
2,640,227 + -1.8
2,640,249 + +0.4
2,640,280 + -2.1
2,640,349 - +0.5
2,640,352 + +1.5
2,640,360 - BWI76_RS12655 0.10 -1.3
2,640,369 - BWI76_RS12655 0.13 -2.3
2,640,394 - BWI76_RS12655 0.21 +1.1
2,640,410 + BWI76_RS12655 0.27 -1.6
2,640,410 + BWI76_RS12655 0.27 +0.8
2,640,410 + BWI76_RS12655 0.27 -0.5
2,640,410 + BWI76_RS12655 0.27 -0.1
2,640,418 + BWI76_RS12655 0.29 +0.1
2,640,418 - BWI76_RS12655 0.29 -2.3
2,640,418 - BWI76_RS12655 0.29 -2.3
2,640,418 - BWI76_RS12655 0.29 -0.3
2,640,418 - BWI76_RS12655 0.29 +1.1
2,640,418 - BWI76_RS12655 0.29 -0.5
2,640,418 - BWI76_RS12655 0.29 +0.1
2,640,418 - BWI76_RS12655 0.29 -0.3
2,640,418 - BWI76_RS12655 0.29 -1.8
2,640,418 - BWI76_RS12655 0.29 -1.9
2,640,418 - -0.5
2,640,418 - BWI76_RS12655 0.29 -0.5
2,640,418 - BWI76_RS12655 0.29 -1.3
2,640,418 - BWI76_RS12655 0.29 +0.1
2,640,425 - BWI76_RS12655 0.32 -0.5
2,640,427 - BWI76_RS12655 0.32 +0.4
2,640,447 + BWI76_RS12655 0.39 -1.5
2,640,450 - +1.1
2,640,455 - BWI76_RS12655 0.42 +1.3
2,640,455 - BWI76_RS12655 0.42 -0.5
2,640,455 - BWI76_RS12655 0.42 +0.1
2,640,455 - BWI76_RS12655 0.42 -3.2
2,640,455 - BWI76_RS12655 0.42 -0.5

Or see this region's nucleotide sequence