Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS04920

Experiment: Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS04910 and BWI76_RS04915 are separated by 175 nucleotidesBWI76_RS04915 and BWI76_RS04920 are separated by 31 nucleotidesBWI76_RS04920 and BWI76_RS04925 are separated by 14 nucleotides BWI76_RS04910: BWI76_RS04910 - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase, at 1,029,429 to 1,032,047 _RS04910 BWI76_RS04915: BWI76_RS04915 - hypothetical protein, at 1,032,223 to 1,032,585 _RS04915 BWI76_RS04920: BWI76_RS04920 - S-adenosylmethionine decarboxylase, at 1,032,617 to 1,033,411 _RS04920 BWI76_RS04925: BWI76_RS04925 - spermidine synthase, at 1,033,426 to 1,034,289 _RS04925 Position (kb) 1032 1033 1034Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1032.184 kb on + strandat 1032.320 kb on + strand, within BWI76_RS04915at 1032.326 kb on + strand, within BWI76_RS04915at 1032.367 kb on + strand, within BWI76_RS04915at 1032.367 kb on + strand, within BWI76_RS04915at 1032.436 kb on + strand, within BWI76_RS04915at 1032.587 kb on - strandat 1032.614 kb on + strandat 1032.614 kb on + strandat 1032.686 kb on - strandat 1032.736 kb on - strand, within BWI76_RS04920at 1032.744 kb on - strand, within BWI76_RS04920at 1032.809 kb on + strand, within BWI76_RS04920at 1032.842 kb on + strand, within BWI76_RS04920at 1032.927 kb on - strand, within BWI76_RS04920at 1032.995 kb on + strand, within BWI76_RS04920at 1033.156 kb on + strand, within BWI76_RS04920at 1033.321 kb on + strand, within BWI76_RS04920at 1033.428 kb on + strandat 1033.429 kb on - strandat 1033.450 kb on + strandat 1033.594 kb on + strand, within BWI76_RS04925at 1033.602 kb on - strand, within BWI76_RS04925at 1033.653 kb on + strand, within BWI76_RS04925at 1033.717 kb on - strand, within BWI76_RS04925at 1033.722 kb on - strand, within BWI76_RS04925at 1033.874 kb on + strand, within BWI76_RS04925at 1034.079 kb on + strand, within BWI76_RS04925at 1034.087 kb on - strand, within BWI76_RS04925at 1034.231 kb on + strandat 1034.278 kb on + strandat 1034.360 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM
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1,032,184 + +0.6
1,032,320 + BWI76_RS04915 0.27 +0.9
1,032,326 + BWI76_RS04915 0.28 +1.1
1,032,367 + BWI76_RS04915 0.40 +0.8
1,032,367 + BWI76_RS04915 0.40 +0.9
1,032,436 + BWI76_RS04915 0.59 +0.7
1,032,587 - -0.6
1,032,614 + -1.4
1,032,614 + +0.5
1,032,686 - +0.3
1,032,736 - BWI76_RS04920 0.15 -1.8
1,032,744 - BWI76_RS04920 0.16 +0.3
1,032,809 + BWI76_RS04920 0.24 +1.6
1,032,842 + BWI76_RS04920 0.28 -0.0
1,032,927 - BWI76_RS04920 0.39 +0.4
1,032,995 + BWI76_RS04920 0.48 -0.1
1,033,156 + BWI76_RS04920 0.68 -0.7
1,033,321 + BWI76_RS04920 0.89 +1.9
1,033,428 + -0.0
1,033,429 - +1.0
1,033,450 + +1.2
1,033,594 + BWI76_RS04925 0.19 -2.4
1,033,602 - BWI76_RS04925 0.20 -1.1
1,033,653 + BWI76_RS04925 0.26 +0.3
1,033,717 - BWI76_RS04925 0.34 +0.6
1,033,722 - BWI76_RS04925 0.34 -1.6
1,033,874 + BWI76_RS04925 0.52 -1.5
1,034,079 + BWI76_RS04925 0.76 -1.0
1,034,087 - BWI76_RS04925 0.77 -0.3
1,034,231 + +0.4
1,034,278 + -3.7
1,034,360 - +0.8

Or see this region's nucleotide sequence