Experiment: Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00940 and BWI76_RS00945 are separated by 118 nucleotides BWI76_RS00945 and BWI76_RS00950 are separated by 23 nucleotides BWI76_RS00950 and BWI76_RS00955 are separated by 349 nucleotides BWI76_RS00955 and BWI76_RS00960 are separated by 139 nucleotides
BWI76_RS00940: BWI76_RS00940 - transcriptional regulator HdfR, at 191,977 to 192,798
_RS00940
BWI76_RS00945: BWI76_RS00945 - hypothetical protein, at 192,917 to 193,255
_RS00945
BWI76_RS00950: BWI76_RS00950 - ATP-dependent protease, at 193,279 to 194,799
_RS00950
BWI76_RS00955: BWI76_RS00955 - IlvGMEDA operon leader peptide, at 195,149 to 195,247
_RS00955
BWI76_RS00960: BWI76_RS00960 - acetolactate synthase 2 catalytic subunit, at 195,387 to 197,033
_RS00960
Position (kb) 193
194
195 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 192.413 kb on + strand, within BWI76_RS00940 at 192.461 kb on + strand, within BWI76_RS00940 at 192.461 kb on + strand, within BWI76_RS00940 at 192.620 kb on + strand, within BWI76_RS00940 at 192.773 kb on - strand at 192.853 kb on + strand at 192.863 kb on - strand at 192.866 kb on + strand at 192.928 kb on - strand at 193.018 kb on + strand, within BWI76_RS00945 at 193.602 kb on - strand, within BWI76_RS00950 at 193.745 kb on - strand, within BWI76_RS00950 at 193.833 kb on - strand, within BWI76_RS00950 at 193.836 kb on + strand, within BWI76_RS00950 at 193.883 kb on + strand, within BWI76_RS00950 at 194.163 kb on + strand, within BWI76_RS00950 at 194.286 kb on - strand, within BWI76_RS00950 at 194.428 kb on + strand, within BWI76_RS00950 at 194.517 kb on + strand, within BWI76_RS00950 at 194.525 kb on - strand, within BWI76_RS00950 at 194.656 kb on - strand at 194.699 kb on - strand at 194.748 kb on + strand at 194.769 kb on - strand at 194.784 kb on - strand at 194.948 kb on + strand at 195.501 kb on + strand at 195.528 kb on - strand at 195.528 kb on - strand at 195.565 kb on - strand, within BWI76_RS00960 at 195.595 kb on + strand, within BWI76_RS00960 at 195.642 kb on - strand at 195.652 kb on - strand, within BWI76_RS00960
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM remove 192,413 + BWI76_RS00940 0.53 -1.9 192,461 + BWI76_RS00940 0.59 +2.9 192,461 + BWI76_RS00940 0.59 -2.7 192,620 + BWI76_RS00940 0.78 -1.7 192,773 - +1.7 192,853 + -0.5 192,863 - +1.4 192,866 + +1.3 192,928 - +0.3 193,018 + BWI76_RS00945 0.30 -0.5 193,602 - BWI76_RS00950 0.21 +1.0 193,745 - BWI76_RS00950 0.31 +1.4 193,833 - BWI76_RS00950 0.36 +3.0 193,836 + BWI76_RS00950 0.37 +1.9 193,883 + BWI76_RS00950 0.40 -0.7 194,163 + BWI76_RS00950 0.58 +0.3 194,286 - BWI76_RS00950 0.66 +0.3 194,428 + BWI76_RS00950 0.76 -1.5 194,517 + BWI76_RS00950 0.81 +0.1 194,525 - BWI76_RS00950 0.82 +0.0 194,656 - +0.8 194,699 - +0.6 194,748 + +0.6 194,769 - +3.0 194,784 - +0.1 194,948 + -0.5 195,501 + -2.3 195,528 - -4.2 195,528 - -1.7 195,565 - BWI76_RS00960 0.11 -3.9 195,595 + BWI76_RS00960 0.13 -1.9 195,642 - +0.1 195,652 - BWI76_RS00960 0.16 -3.1
Or see this region's nucleotide sequence