Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS36235 and BPHYT_RS36240 are separated by 48 nucleotides BPHYT_RS36240 and BPHYT_RS36245 are separated by 18 nucleotides BPHYT_RS36245 and BPHYT_RS36250 are separated by 159 nucleotides BPHYT_RS36250 and BPHYT_RS36255 are separated by 168 nucleotides BPHYT_RS36255 and BPHYT_RS36260 are separated by 362 nucleotides
BPHYT_RS36235: BPHYT_RS36235 - hypothetical protein, at 60,480 to 60,860
_RS36235
BPHYT_RS36240: BPHYT_RS36240 - hypothetical protein, at 60,909 to 61,121
_RS36240
BPHYT_RS36245: BPHYT_RS36245 - hypothetical protein, at 61,140 to 61,418
_RS36245
BPHYT_RS36250: BPHYT_RS36250 - hypothetical protein, at 61,578 to 61,940
_RS36250
BPHYT_RS36255: BPHYT_RS36255 - hypothetical protein, at 62,109 to 62,321
_RS36255
BPHYT_RS36260: BPHYT_RS36260 - hypothetical protein, at 62,684 to 63,091
_RS36260
Position (kb) 61
62 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 60.908 kb on + strand at 60.948 kb on - strand, within BPHYT_RS36240 at 60.994 kb on + strand, within BPHYT_RS36240 at 60.995 kb on - strand, within BPHYT_RS36240 at 61.203 kb on + strand, within BPHYT_RS36245 at 61.224 kb on + strand, within BPHYT_RS36245 at 61.225 kb on - strand, within BPHYT_RS36245 at 61.375 kb on + strand, within BPHYT_RS36245 at 61.376 kb on - strand, within BPHYT_RS36245 at 61.488 kb on + strand at 61.543 kb on - strand at 61.543 kb on - strand at 61.701 kb on + strand, within BPHYT_RS36250 at 61.781 kb on - strand, within BPHYT_RS36250 at 61.907 kb on + strand at 61.938 kb on + strand at 62.044 kb on + strand at 62.045 kb on - strand at 62.127 kb on + strand at 62.127 kb on + strand at 62.127 kb on + strand at 62.239 kb on - strand, within BPHYT_RS36255 at 62.453 kb on + strand at 62.453 kb on + strand at 62.453 kb on + strand at 62.454 kb on - strand at 62.495 kb on + strand at 62.506 kb on - strand at 62.509 kb on + strand at 62.516 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 60,908 + -1.7 60,948 - BPHYT_RS36240 0.18 -0.3 60,994 + BPHYT_RS36240 0.40 -1.6 60,995 - BPHYT_RS36240 0.40 -2.1 61,203 + BPHYT_RS36245 0.23 -0.6 61,224 + BPHYT_RS36245 0.30 +0.5 61,225 - BPHYT_RS36245 0.30 +0.3 61,375 + BPHYT_RS36245 0.84 -0.2 61,376 - BPHYT_RS36245 0.85 -1.4 61,488 + -0.7 61,543 - +1.5 61,543 - +0.1 61,701 + BPHYT_RS36250 0.34 +1.2 61,781 - BPHYT_RS36250 0.56 +0.7 61,907 + -0.2 61,938 + +0.9 62,044 + +0.2 62,045 - +1.3 62,127 + +1.0 62,127 + -0.1 62,127 + -2.3 62,239 - BPHYT_RS36255 0.61 -0.2 62,453 + -0.1 62,453 + -3.9 62,453 + -0.5 62,454 - -0.0 62,495 + +0.4 62,506 - -1.4 62,509 + -0.1 62,516 + +0.0
Or see this region's nucleotide sequence