Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS36170 and BPHYT_RS36175 are separated by 117 nucleotides BPHYT_RS36175 and BPHYT_RS36180 are separated by 97 nucleotides BPHYT_RS36180 and BPHYT_RS36185 are separated by 241 nucleotides
BPHYT_RS36170: BPHYT_RS36170 - hypothetical protein, at 50,077 to 50,343
_RS36170
BPHYT_RS36175: BPHYT_RS36175 - hypothetical protein, at 50,461 to 50,697
_RS36175
BPHYT_RS36180: BPHYT_RS36180 - hypothetical protein, at 50,795 to 51,109
_RS36180
BPHYT_RS36185: BPHYT_RS36185 - hypothetical protein, at 51,351 to 51,665
_RS36185
Position (kb) 50
51 Strain fitness (log2 ratio) -2
-1
0
1 at 50.560 kb on - strand, within BPHYT_RS36175 at 50.615 kb on - strand, within BPHYT_RS36175 at 50.703 kb on - strand at 50.793 kb on + strand at 50.852 kb on + strand, within BPHYT_RS36180 at 50.853 kb on - strand, within BPHYT_RS36180 at 50.853 kb on - strand, within BPHYT_RS36180 at 50.853 kb on - strand, within BPHYT_RS36180 at 50.932 kb on + strand, within BPHYT_RS36180 at 51.114 kb on - strand at 51.125 kb on + strand at 51.330 kb on + strand at 51.330 kb on + strand at 51.435 kb on + strand, within BPHYT_RS36185 at 51.435 kb on + strand, within BPHYT_RS36185 at 51.661 kb on - strand at 51.661 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 50,560 - BPHYT_RS36175 0.42 +0.9 50,615 - BPHYT_RS36175 0.65 +0.9 50,703 - -0.2 50,793 + -0.6 50,852 + BPHYT_RS36180 0.18 -0.0 50,853 - BPHYT_RS36180 0.18 +0.1 50,853 - BPHYT_RS36180 0.18 +0.6 50,853 - BPHYT_RS36180 0.18 -0.3 50,932 + BPHYT_RS36180 0.43 -0.7 51,114 - +1.2 51,125 + -0.1 51,330 + +0.1 51,330 + -2.2 51,435 + BPHYT_RS36185 0.27 -2.6 51,435 + BPHYT_RS36185 0.27 -0.2 51,661 - -1.3 51,661 - +0.1
Or see this region's nucleotide sequence