Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33620

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS33610 and BPHYT_RS33615 are separated by 1 nucleotidesBPHYT_RS33615 and BPHYT_RS33620 are separated by 60 nucleotidesBPHYT_RS33620 and BPHYT_RS33625 are separated by 97 nucleotidesBPHYT_RS33625 and BPHYT_RS33630 overlap by 4 nucleotides BPHYT_RS33610: BPHYT_RS33610 - DNA polymerase I, at 3,125,085 to 3,127,826 _RS33610 BPHYT_RS33615: BPHYT_RS33615 - decarboxylase, at 3,127,828 to 3,128,571 _RS33615 BPHYT_RS33620: BPHYT_RS33620 - transcriptional regulator, at 3,128,632 to 3,129,549 _RS33620 BPHYT_RS33625: BPHYT_RS33625 - chromate transporter, at 3,129,647 to 3,130,216 _RS33625 BPHYT_RS33630: BPHYT_RS33630 - chromate transporter, at 3,130,213 to 3,130,743 _RS33630 Position (kb) 3128 3129 3130Strain fitness (log2 ratio) -2 -1 0 1at 3127.891 kb on - strandat 3127.987 kb on + strand, within BPHYT_RS33615at 3127.987 kb on + strand, within BPHYT_RS33615at 3127.987 kb on + strand, within BPHYT_RS33615at 3127.988 kb on - strand, within BPHYT_RS33615at 3127.988 kb on - strand, within BPHYT_RS33615at 3128.564 kb on - strandat 3128.623 kb on - strandat 3128.813 kb on - strand, within BPHYT_RS33620at 3128.885 kb on + strand, within BPHYT_RS33620at 3129.344 kb on + strand, within BPHYT_RS33620at 3129.345 kb on - strand, within BPHYT_RS33620at 3129.345 kb on - strand, within BPHYT_RS33620at 3129.561 kb on + strandat 3130.183 kb on + strandat 3130.183 kb on + strandat 3130.183 kb on + strandat 3130.183 kb on + strandat 3130.184 kb on - strandat 3130.190 kb on + strandat 3130.190 kb on + strandat 3130.190 kb on + strandat 3130.191 kb on - strandat 3130.191 kb on - strandat 3130.243 kb on - strandat 3130.284 kb on + strand, within BPHYT_RS33630at 3130.285 kb on - strand, within BPHYT_RS33630

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
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3,127,891 - +0.9
3,127,987 + BPHYT_RS33615 0.21 -1.6
3,127,987 + BPHYT_RS33615 0.21 +0.5
3,127,987 + BPHYT_RS33615 0.21 -0.7
3,127,988 - BPHYT_RS33615 0.22 +1.6
3,127,988 - BPHYT_RS33615 0.22 +0.6
3,128,564 - +0.5
3,128,623 - -1.8
3,128,813 - BPHYT_RS33620 0.20 -0.4
3,128,885 + BPHYT_RS33620 0.28 -1.1
3,129,344 + BPHYT_RS33620 0.78 -1.3
3,129,345 - BPHYT_RS33620 0.78 -1.2
3,129,345 - BPHYT_RS33620 0.78 -1.0
3,129,561 + -1.3
3,130,183 + -0.0
3,130,183 + +0.1
3,130,183 + -0.5
3,130,183 + +0.6
3,130,184 - -0.5
3,130,190 + -0.2
3,130,190 + -0.4
3,130,190 + -1.4
3,130,191 - -0.2
3,130,191 - +1.5
3,130,243 - -1.7
3,130,284 + BPHYT_RS33630 0.13 +0.1
3,130,285 - BPHYT_RS33630 0.14 -2.2

Or see this region's nucleotide sequence