Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS33610 and BPHYT_RS33615 are separated by 1 nucleotides BPHYT_RS33615 and BPHYT_RS33620 are separated by 60 nucleotides BPHYT_RS33620 and BPHYT_RS33625 are separated by 97 nucleotides BPHYT_RS33625 and BPHYT_RS33630 overlap by 4 nucleotides
BPHYT_RS33610: BPHYT_RS33610 - DNA polymerase I, at 3,125,085 to 3,127,826
_RS33610
BPHYT_RS33615: BPHYT_RS33615 - decarboxylase, at 3,127,828 to 3,128,571
_RS33615
BPHYT_RS33620: BPHYT_RS33620 - transcriptional regulator, at 3,128,632 to 3,129,549
_RS33620
BPHYT_RS33625: BPHYT_RS33625 - chromate transporter, at 3,129,647 to 3,130,216
_RS33625
BPHYT_RS33630: BPHYT_RS33630 - chromate transporter, at 3,130,213 to 3,130,743
_RS33630
Position (kb) 3128
3129
3130 Strain fitness (log2 ratio) -2
-1
0
1 at 3127.891 kb on - strand at 3127.987 kb on + strand, within BPHYT_RS33615 at 3127.987 kb on + strand, within BPHYT_RS33615 at 3127.987 kb on + strand, within BPHYT_RS33615 at 3127.988 kb on - strand, within BPHYT_RS33615 at 3127.988 kb on - strand, within BPHYT_RS33615 at 3128.564 kb on - strand at 3128.623 kb on - strand at 3128.813 kb on - strand, within BPHYT_RS33620 at 3128.885 kb on + strand, within BPHYT_RS33620 at 3129.344 kb on + strand, within BPHYT_RS33620 at 3129.345 kb on - strand, within BPHYT_RS33620 at 3129.345 kb on - strand, within BPHYT_RS33620 at 3129.561 kb on + strand at 3130.183 kb on + strand at 3130.183 kb on + strand at 3130.183 kb on + strand at 3130.183 kb on + strand at 3130.184 kb on - strand at 3130.190 kb on + strand at 3130.190 kb on + strand at 3130.190 kb on + strand at 3130.191 kb on - strand at 3130.191 kb on - strand at 3130.243 kb on - strand at 3130.284 kb on + strand, within BPHYT_RS33630 at 3130.285 kb on - strand, within BPHYT_RS33630
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 3,127,891 - +0.9 3,127,987 + BPHYT_RS33615 0.21 -1.6 3,127,987 + BPHYT_RS33615 0.21 +0.5 3,127,987 + BPHYT_RS33615 0.21 -0.7 3,127,988 - BPHYT_RS33615 0.22 +1.6 3,127,988 - BPHYT_RS33615 0.22 +0.6 3,128,564 - +0.5 3,128,623 - -1.8 3,128,813 - BPHYT_RS33620 0.20 -0.4 3,128,885 + BPHYT_RS33620 0.28 -1.1 3,129,344 + BPHYT_RS33620 0.78 -1.3 3,129,345 - BPHYT_RS33620 0.78 -1.2 3,129,345 - BPHYT_RS33620 0.78 -1.0 3,129,561 + -1.3 3,130,183 + -0.0 3,130,183 + +0.1 3,130,183 + -0.5 3,130,183 + +0.6 3,130,184 - -0.5 3,130,190 + -0.2 3,130,190 + -0.4 3,130,190 + -1.4 3,130,191 - -0.2 3,130,191 - +1.5 3,130,243 - -1.7 3,130,284 + BPHYT_RS33630 0.13 +0.1 3,130,285 - BPHYT_RS33630 0.14 -2.2
Or see this region's nucleotide sequence