Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS32900 and BPHYT_RS32905 are separated by 20 nucleotides BPHYT_RS32905 and BPHYT_RS32910 are separated by 215 nucleotides BPHYT_RS32910 and BPHYT_RS32915 are separated by 272 nucleotides
BPHYT_RS32900: BPHYT_RS32900 - MFS transporter, at 2,961,534 to 2,962,835
_RS32900
BPHYT_RS32905: BPHYT_RS32905 - FAD-linked oxidase, at 2,962,856 to 2,964,247
_RS32905
BPHYT_RS32910: BPHYT_RS32910 - hypothetical protein, at 2,964,463 to 2,964,834
_RS32910
BPHYT_RS32915: BPHYT_RS32915 - LysR family transcriptional regulator, at 2,965,107 to 2,966,009
_RS32915
Position (kb)
2962
2963
2964
2965 Strain fitness (log2 ratio)
-2
-1
0
1 at 2961.969 kb on + strand, within BPHYT_RS32900 at 2961.970 kb on - strand, within BPHYT_RS32900 at 2962.020 kb on - strand, within BPHYT_RS32900 at 2962.025 kb on - strand, within BPHYT_RS32900 at 2962.025 kb on - strand, within BPHYT_RS32900 at 2962.107 kb on + strand, within BPHYT_RS32900 at 2962.685 kb on + strand, within BPHYT_RS32900 at 2962.686 kb on - strand, within BPHYT_RS32900 at 2962.883 kb on + strand at 2962.902 kb on + strand at 2963.528 kb on - strand, within BPHYT_RS32905 at 2963.653 kb on + strand, within BPHYT_RS32905 at 2963.688 kb on - strand, within BPHYT_RS32905 at 2964.182 kb on - strand at 2964.182 kb on - strand at 2964.319 kb on - strand at 2964.319 kb on - strand at 2964.354 kb on + strand at 2964.492 kb on + strand at 2964.828 kb on - strand at 2964.838 kb on - strand at 2964.838 kb on - strand at 2964.912 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 2,961,969 + BPHYT_RS32900 0.33 +1.2 2,961,970 - BPHYT_RS32900 0.33 +1.2 2,962,020 - BPHYT_RS32900 0.37 +0.4 2,962,025 - BPHYT_RS32900 0.38 +1.0 2,962,025 - BPHYT_RS32900 0.38 +1.4 2,962,107 + BPHYT_RS32900 0.44 +1.6 2,962,685 + BPHYT_RS32900 0.88 -0.4 2,962,686 - BPHYT_RS32900 0.88 +0.6 2,962,883 + +0.1 2,962,902 + -2.3 2,963,528 - BPHYT_RS32905 0.48 +1.0 2,963,653 + BPHYT_RS32905 0.57 +1.5 2,963,688 - BPHYT_RS32905 0.60 +0.8 2,964,182 - -0.4 2,964,182 - -1.3 2,964,319 - +0.2 2,964,319 - -0.8 2,964,354 + +0.0 2,964,492 + +0.9 2,964,828 - -0.0 2,964,838 - +1.0 2,964,838 - +0.9 2,964,912 - +1.5
Or see this region's nucleotide sequence