Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32905

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS32900 and BPHYT_RS32905 are separated by 20 nucleotidesBPHYT_RS32905 and BPHYT_RS32910 are separated by 215 nucleotidesBPHYT_RS32910 and BPHYT_RS32915 are separated by 272 nucleotides BPHYT_RS32900: BPHYT_RS32900 - MFS transporter, at 2,961,534 to 2,962,835 _RS32900 BPHYT_RS32905: BPHYT_RS32905 - FAD-linked oxidase, at 2,962,856 to 2,964,247 _RS32905 BPHYT_RS32910: BPHYT_RS32910 - hypothetical protein, at 2,964,463 to 2,964,834 _RS32910 BPHYT_RS32915: BPHYT_RS32915 - LysR family transcriptional regulator, at 2,965,107 to 2,966,009 _RS32915 Position (kb) 2962 2963 2964 2965Strain fitness (log2 ratio) -2 -1 0 1at 2961.969 kb on + strand, within BPHYT_RS32900at 2961.970 kb on - strand, within BPHYT_RS32900at 2962.020 kb on - strand, within BPHYT_RS32900at 2962.025 kb on - strand, within BPHYT_RS32900at 2962.025 kb on - strand, within BPHYT_RS32900at 2962.107 kb on + strand, within BPHYT_RS32900at 2962.685 kb on + strand, within BPHYT_RS32900at 2962.686 kb on - strand, within BPHYT_RS32900at 2962.883 kb on + strandat 2962.902 kb on + strandat 2963.528 kb on - strand, within BPHYT_RS32905at 2963.653 kb on + strand, within BPHYT_RS32905at 2963.688 kb on - strand, within BPHYT_RS32905at 2964.182 kb on - strandat 2964.182 kb on - strandat 2964.319 kb on - strandat 2964.319 kb on - strandat 2964.354 kb on + strandat 2964.492 kb on + strandat 2964.828 kb on - strandat 2964.838 kb on - strandat 2964.838 kb on - strandat 2964.912 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
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2,961,969 + BPHYT_RS32900 0.33 +1.2
2,961,970 - BPHYT_RS32900 0.33 +1.2
2,962,020 - BPHYT_RS32900 0.37 +0.4
2,962,025 - BPHYT_RS32900 0.38 +1.0
2,962,025 - BPHYT_RS32900 0.38 +1.4
2,962,107 + BPHYT_RS32900 0.44 +1.6
2,962,685 + BPHYT_RS32900 0.88 -0.4
2,962,686 - BPHYT_RS32900 0.88 +0.6
2,962,883 + +0.1
2,962,902 + -2.3
2,963,528 - BPHYT_RS32905 0.48 +1.0
2,963,653 + BPHYT_RS32905 0.57 +1.5
2,963,688 - BPHYT_RS32905 0.60 +0.8
2,964,182 - -0.4
2,964,182 - -1.3
2,964,319 - +0.2
2,964,319 - -0.8
2,964,354 + +0.0
2,964,492 + +0.9
2,964,828 - -0.0
2,964,838 - +1.0
2,964,838 - +0.9
2,964,912 - +1.5

Or see this region's nucleotide sequence