Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS30645

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS30640 and BPHYT_RS30645 are separated by 15 nucleotidesBPHYT_RS30645 and BPHYT_RS30650 are separated by 270 nucleotides BPHYT_RS30640: BPHYT_RS30640 - ABC transporter substrate-binding protein, at 2,431,274 to 2,432,383 _RS30640 BPHYT_RS30645: BPHYT_RS30645 - hypothetical protein, at 2,432,399 to 2,433,142 _RS30645 BPHYT_RS30650: BPHYT_RS30650 - hypothetical protein, at 2,433,413 to 2,433,778 _RS30650 Position (kb) 2432 2433 2434Strain fitness (log2 ratio) -2 -1 0 1 2at 2431.536 kb on - strand, within BPHYT_RS30640at 2431.725 kb on + strand, within BPHYT_RS30640at 2431.726 kb on - strand, within BPHYT_RS30640at 2431.870 kb on + strand, within BPHYT_RS30640at 2431.871 kb on - strand, within BPHYT_RS30640at 2432.162 kb on + strand, within BPHYT_RS30640at 2432.240 kb on + strand, within BPHYT_RS30640at 2432.241 kb on - strand, within BPHYT_RS30640at 2432.386 kb on + strandat 2432.623 kb on - strand, within BPHYT_RS30645at 2432.741 kb on + strand, within BPHYT_RS30645at 2432.965 kb on - strand, within BPHYT_RS30645at 2433.234 kb on + strandat 2433.332 kb on - strandat 2433.634 kb on + strand, within BPHYT_RS30650at 2433.634 kb on + strand, within BPHYT_RS30650at 2433.637 kb on - strand, within BPHYT_RS30650at 2433.637 kb on - strand, within BPHYT_RS30650at 2433.776 kb on + strandat 2433.919 kb on + strandat 2434.115 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
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2,431,536 - BPHYT_RS30640 0.24 -0.4
2,431,725 + BPHYT_RS30640 0.41 +0.7
2,431,726 - BPHYT_RS30640 0.41 -1.8
2,431,870 + BPHYT_RS30640 0.54 +1.8
2,431,871 - BPHYT_RS30640 0.54 +1.2
2,432,162 + BPHYT_RS30640 0.80 +0.5
2,432,240 + BPHYT_RS30640 0.87 +0.8
2,432,241 - BPHYT_RS30640 0.87 +0.0
2,432,386 + +0.2
2,432,623 - BPHYT_RS30645 0.30 -0.0
2,432,741 + BPHYT_RS30645 0.46 +2.6
2,432,965 - BPHYT_RS30645 0.76 +1.1
2,433,234 + -0.4
2,433,332 - -0.3
2,433,634 + BPHYT_RS30650 0.60 +1.5
2,433,634 + BPHYT_RS30650 0.60 +0.8
2,433,637 - BPHYT_RS30650 0.61 -0.5
2,433,637 - BPHYT_RS30650 0.61 -0.2
2,433,776 + -0.2
2,433,919 + +0.4
2,434,115 + +0.2

Or see this region's nucleotide sequence