Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25445

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS25445 and BPHYT_RS25450 are separated by 100 nucleotides BPHYT_RS25445: BPHYT_RS25445 - alkyl hydroperoxide reductase, at 1,286,463 to 1,287,101 _RS25445 BPHYT_RS25450: BPHYT_RS25450 - membrane protein, at 1,287,202 to 1,288,491 _RS25450 Position (kb) 1286 1287 1288Strain fitness (log2 ratio) -1 0 1at 1286.105 kb on - strandat 1286.467 kb on + strandat 1286.499 kb on + strandat 1287.001 kb on + strand, within BPHYT_RS25445at 1287.168 kb on + strandat 1287.857 kb on + strand, within BPHYT_RS25450

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
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1,286,105 - +0.8
1,286,467 + +0.6
1,286,499 + +0.3
1,287,001 + BPHYT_RS25445 0.84 +1.0
1,287,168 + +0.6
1,287,857 + BPHYT_RS25450 0.51 +0.1

Or see this region's nucleotide sequence