Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22755

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS22750 and BPHYT_RS22755 are separated by 250 nucleotidesBPHYT_RS22755 and BPHYT_RS22760 are separated by 193 nucleotides BPHYT_RS22750: BPHYT_RS22750 - Flagellar brake protein YcgR 2, at 661,389 to 662,162 _RS22750 BPHYT_RS22755: BPHYT_RS22755 - LacI family transcription regulator, at 662,413 to 663,444 _RS22755 BPHYT_RS22760: BPHYT_RS22760 - sugar ABC transporter ATP-binding protein, at 663,638 to 664,792 _RS22760 Position (kb) 662 663 664Strain fitness (log2 ratio) -2 -1 0 1at 661.726 kb on + strand, within BPHYT_RS22750at 661.778 kb on - strand, within BPHYT_RS22750at 662.169 kb on - strandat 662.169 kb on - strandat 662.256 kb on - strandat 662.256 kb on - strandat 662.403 kb on + strandat 662.514 kb on - strandat 662.540 kb on - strand, within BPHYT_RS22755at 662.540 kb on - strand, within BPHYT_RS22755at 663.224 kb on + strand, within BPHYT_RS22755at 663.655 kb on - strandat 664.328 kb on + strand, within BPHYT_RS22760

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
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661,726 + BPHYT_RS22750 0.44 +0.9
661,778 - BPHYT_RS22750 0.50 -0.4
662,169 - -0.2
662,169 - +0.7
662,256 - -0.2
662,256 - +0.3
662,403 + -0.1
662,514 - -0.9
662,540 - BPHYT_RS22755 0.12 -1.8
662,540 - BPHYT_RS22755 0.12 -0.2
663,224 + BPHYT_RS22755 0.79 -2.5
663,655 - +0.2
664,328 + BPHYT_RS22760 0.60 +0.2

Or see this region's nucleotide sequence