Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22250 and BPHYT_RS22255 are separated by 5 nucleotides BPHYT_RS22255 and BPHYT_RS22260 are separated by 58 nucleotides BPHYT_RS22260 and BPHYT_RS22265 are separated by 106 nucleotides BPHYT_RS22265 and BPHYT_RS22270 are separated by 10 nucleotides
BPHYT_RS22250: BPHYT_RS22250 - D-amino acid dehydrogenase, at 549,665 to 550,909
_RS22250
BPHYT_RS22255: BPHYT_RS22255 - hypothetical protein, at 550,915 to 551,259
_RS22255
BPHYT_RS22260: BPHYT_RS22260 - hypothetical protein, at 551,318 to 551,608
_RS22260
BPHYT_RS22265: BPHYT_RS22265 - hypothetical protein, at 551,715 to 552,506
_RS22265
BPHYT_RS22270: BPHYT_RS22270 - membrane protein, at 552,517 to 555,135
_RS22270
Position (kb) 551
552
553 Strain fitness (log2 ratio) -2
-1
0
1
2 at 550.917 kb on - strand at 550.917 kb on - strand at 550.919 kb on - strand at 550.919 kb on - strand at 551.070 kb on - strand, within BPHYT_RS22255 at 551.267 kb on + strand at 551.345 kb on + strand at 551.516 kb on - strand, within BPHYT_RS22260 at 551.606 kb on + strand at 551.607 kb on - strand at 551.623 kb on + strand at 551.715 kb on - strand at 551.768 kb on - strand at 551.768 kb on - strand at 551.940 kb on + strand, within BPHYT_RS22265 at 551.976 kb on - strand, within BPHYT_RS22265 at 552.516 kb on + strand at 552.516 kb on + strand at 552.517 kb on - strand at 552.517 kb on - strand at 552.526 kb on + strand at 552.530 kb on + strand at 552.643 kb on + strand at 552.643 kb on + strand at 552.644 kb on - strand at 552.673 kb on + strand at 553.120 kb on + strand, within BPHYT_RS22270 at 553.300 kb on + strand, within BPHYT_RS22270 at 553.302 kb on + strand, within BPHYT_RS22270 at 553.303 kb on - strand, within BPHYT_RS22270
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 550,917 - -1.4 550,917 - -1.7 550,919 - -1.3 550,919 - +1.5 551,070 - BPHYT_RS22255 0.45 +0.3 551,267 + +1.3 551,345 + -0.2 551,516 - BPHYT_RS22260 0.68 +0.0 551,606 + -2.3 551,607 - +0.2 551,623 + +0.2 551,715 - +1.0 551,768 - -1.0 551,768 - -2.7 551,940 + BPHYT_RS22265 0.28 +0.7 551,976 - BPHYT_RS22265 0.33 +2.1 552,516 + +1.9 552,516 + +2.1 552,517 - +1.1 552,517 - +0.6 552,526 + -1.4 552,530 + +0.4 552,643 + -2.5 552,643 + -1.1 552,644 - +0.3 552,673 + -2.0 553,120 + BPHYT_RS22270 0.23 -1.1 553,300 + BPHYT_RS22270 0.30 +0.1 553,302 + BPHYT_RS22270 0.30 -2.0 553,303 - BPHYT_RS22270 0.30 +0.5
Or see this region's nucleotide sequence