Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS21715

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS21710 and BPHYT_RS21715 are separated by 219 nucleotidesBPHYT_RS21715 and BPHYT_RS21720 overlap by 8 nucleotidesBPHYT_RS21720 and BPHYT_RS21725 are separated by 33 nucleotides BPHYT_RS21710: BPHYT_RS21710 - DeoR faimly transcriptional regulator, at 426,574 to 428,007 _RS21710 BPHYT_RS21715: BPHYT_RS21715 - taurine ABC transporter permease, at 428,227 to 429,147 _RS21715 BPHYT_RS21720: BPHYT_RS21720 - nitrate ABC transporter ATP-binding protein, at 429,140 to 429,955 _RS21720 BPHYT_RS21725: BPHYT_RS21725 - taurine ABC transporter substrate-binding protein, at 429,989 to 431,023 _RS21725 Position (kb) 428 429 430Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 427.298 kb on + strand, within BPHYT_RS21710at 427.330 kb on - strand, within BPHYT_RS21710at 427.399 kb on + strand, within BPHYT_RS21710at 427.400 kb on - strand, within BPHYT_RS21710at 427.712 kb on + strand, within BPHYT_RS21710at 427.713 kb on - strand, within BPHYT_RS21710at 427.714 kb on + strand, within BPHYT_RS21710at 427.857 kb on - strand, within BPHYT_RS21710at 428.067 kb on - strandat 428.091 kb on - strandat 428.858 kb on + strand, within BPHYT_RS21715at 428.859 kb on - strand, within BPHYT_RS21715at 429.135 kb on + strandat 429.189 kb on + strandat 429.298 kb on + strand, within BPHYT_RS21720at 429.298 kb on + strand, within BPHYT_RS21720at 429.552 kb on + strand, within BPHYT_RS21720at 429.552 kb on + strand, within BPHYT_RS21720at 429.552 kb on + strand, within BPHYT_RS21720at 429.739 kb on + strand, within BPHYT_RS21720at 429.985 kb on + strandat 430.017 kb on + strandat 430.018 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
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427,298 + BPHYT_RS21710 0.50 -0.4
427,330 - BPHYT_RS21710 0.53 +1.9
427,399 + BPHYT_RS21710 0.58 -0.5
427,400 - BPHYT_RS21710 0.58 -0.3
427,712 + BPHYT_RS21710 0.79 +0.2
427,713 - BPHYT_RS21710 0.79 -0.4
427,714 + BPHYT_RS21710 0.79 +0.6
427,857 - BPHYT_RS21710 0.89 +0.6
428,067 - +2.1
428,091 - +1.1
428,858 + BPHYT_RS21715 0.69 +1.2
428,859 - BPHYT_RS21715 0.69 +0.7
429,135 + +0.8
429,189 + -0.1
429,298 + BPHYT_RS21720 0.19 +0.3
429,298 + BPHYT_RS21720 0.19 -3.3
429,552 + BPHYT_RS21720 0.50 +0.2
429,552 + BPHYT_RS21720 0.50 -0.4
429,552 + BPHYT_RS21720 0.50 -1.5
429,739 + BPHYT_RS21720 0.73 +0.5
429,985 + +0.6
430,017 + +0.3
430,018 - -0.5

Or see this region's nucleotide sequence