Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20535 and BPHYT_RS20540 overlap by 19 nucleotides BPHYT_RS20540 and BPHYT_RS20545 are separated by 87 nucleotides BPHYT_RS20545 and BPHYT_RS20550 are separated by 160 nucleotides
BPHYT_RS20535: BPHYT_RS20535 - allantoate amidohydrolase, at 169,451 to 170,692
_RS20535
BPHYT_RS20540: BPHYT_RS20540 - N-acetyltransferase GCN5, at 170,674 to 171,555
_RS20540
BPHYT_RS20545: BPHYT_RS20545 - hypothetical protein, at 171,643 to 171,948
_RS20545
BPHYT_RS20550: BPHYT_RS20550 - methylated-DNA-protein-cysteine methyltransferase, at 172,109 to 172,741
_RS20550
Position (kb) 171
172 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 170.808 kb on + strand, within BPHYT_RS20540 at 170.911 kb on + strand, within BPHYT_RS20540 at 170.912 kb on - strand, within BPHYT_RS20540 at 170.912 kb on - strand, within BPHYT_RS20540 at 170.912 kb on - strand, within BPHYT_RS20540 at 170.914 kb on - strand, within BPHYT_RS20540 at 170.977 kb on + strand, within BPHYT_RS20540 at 171.031 kb on + strand, within BPHYT_RS20540 at 171.032 kb on - strand, within BPHYT_RS20540 at 171.112 kb on + strand, within BPHYT_RS20540 at 171.488 kb on - strand at 171.509 kb on + strand at 171.644 kb on + strand at 171.645 kb on - strand at 171.831 kb on - strand, within BPHYT_RS20545 at 171.859 kb on + strand, within BPHYT_RS20545 at 171.929 kb on - strand at 171.981 kb on + strand at 171.987 kb on + strand at 171.988 kb on - strand at 172.018 kb on - strand at 172.734 kb on + strand at 172.735 kb on - strand at 172.735 kb on - strand at 172.797 kb on + strand at 172.934 kb on + strand at 172.934 kb on + strand at 172.934 kb on + strand at 172.935 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 170,808 + BPHYT_RS20540 0.15 -0.4 170,911 + BPHYT_RS20540 0.27 +0.3 170,912 - BPHYT_RS20540 0.27 +0.0 170,912 - BPHYT_RS20540 0.27 +0.1 170,912 - BPHYT_RS20540 0.27 +0.5 170,914 - BPHYT_RS20540 0.27 -0.6 170,977 + BPHYT_RS20540 0.34 +1.2 171,031 + BPHYT_RS20540 0.40 +0.8 171,032 - BPHYT_RS20540 0.41 +0.0 171,112 + BPHYT_RS20540 0.50 -0.3 171,488 - +1.0 171,509 + +0.1 171,644 + -0.4 171,645 - +1.8 171,831 - BPHYT_RS20545 0.61 +0.5 171,859 + BPHYT_RS20545 0.71 +5.8 171,929 - +0.7 171,981 + +0.8 171,987 + -1.7 171,988 - +0.0 172,018 - +1.1 172,734 + +0.0 172,735 - -2.4 172,735 - +1.3 172,797 + +0.5 172,934 + -1.0 172,934 + +1.5 172,934 + -2.4 172,935 - +0.8
Or see this region's nucleotide sequence