Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS14125 and BPHYT_RS14130 are separated by 28 nucleotides BPHYT_RS14130 and BPHYT_RS14135 are separated by 17 nucleotides BPHYT_RS14135 and BPHYT_RS14140 overlap by 4 nucleotides
BPHYT_RS14125: BPHYT_RS14125 - transcriptional regulator, at 3,225,969 to 3,226,673
_RS14125
BPHYT_RS14130: BPHYT_RS14130 - phosphate ABC transporter ATP-binding protein, at 3,226,702 to 3,227,550
_RS14130
BPHYT_RS14135: BPHYT_RS14135 - phosphate transporter permease subunit PtsA, at 3,227,568 to 3,228,464
_RS14135
BPHYT_RS14140: BPHYT_RS14140 - phosphate transporter permease subunit PstC, at 3,228,461 to 3,229,462
_RS14140
Position (kb) 3227
3228
3229 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 3226.679 kb on - strand at 3226.679 kb on - strand at 3226.688 kb on + strand at 3226.688 kb on + strand at 3226.688 kb on + strand at 3226.688 kb on + strand at 3226.689 kb on - strand at 3226.724 kb on + strand at 3226.724 kb on + strand at 3226.799 kb on + strand, within BPHYT_RS14130 at 3226.799 kb on + strand, within BPHYT_RS14130 at 3226.803 kb on + strand, within BPHYT_RS14130 at 3226.803 kb on + strand, within BPHYT_RS14130 at 3226.803 kb on + strand, within BPHYT_RS14130 at 3226.803 kb on + strand, within BPHYT_RS14130 at 3226.803 kb on + strand, within BPHYT_RS14130 at 3226.805 kb on + strand, within BPHYT_RS14130 at 3226.805 kb on + strand, within BPHYT_RS14130 at 3226.814 kb on + strand, within BPHYT_RS14130 at 3226.868 kb on + strand, within BPHYT_RS14130 at 3227.297 kb on + strand, within BPHYT_RS14130 at 3227.297 kb on + strand, within BPHYT_RS14130 at 3227.297 kb on + strand, within BPHYT_RS14130 at 3227.297 kb on + strand, within BPHYT_RS14130 at 3227.408 kb on + strand, within BPHYT_RS14130 at 3227.544 kb on + strand at 3227.569 kb on + strand at 3227.570 kb on - strand at 3227.570 kb on - strand at 3227.689 kb on + strand, within BPHYT_RS14135 at 3227.689 kb on + strand, within BPHYT_RS14135 at 3228.300 kb on - strand, within BPHYT_RS14135 at 3228.444 kb on - strand at 3228.619 kb on + strand, within BPHYT_RS14140 at 3228.619 kb on + strand, within BPHYT_RS14140 at 3228.620 kb on - strand, within BPHYT_RS14140 at 3228.997 kb on - strand, within BPHYT_RS14140 at 3229.194 kb on + strand, within BPHYT_RS14140 at 3229.195 kb on - strand, within BPHYT_RS14140 at 3229.195 kb on - strand, within BPHYT_RS14140
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 3,226,679 - -1.4 3,226,679 - -0.9 3,226,688 + +0.2 3,226,688 + -0.8 3,226,688 + -0.0 3,226,688 + +1.3 3,226,689 - -0.3 3,226,724 + +0.9 3,226,724 + +0.6 3,226,799 + BPHYT_RS14130 0.11 +0.1 3,226,799 + BPHYT_RS14130 0.11 -0.6 3,226,803 + BPHYT_RS14130 0.12 +0.9 3,226,803 + BPHYT_RS14130 0.12 -0.1 3,226,803 + BPHYT_RS14130 0.12 +1.1 3,226,803 + BPHYT_RS14130 0.12 -0.5 3,226,803 + BPHYT_RS14130 0.12 -0.6 3,226,805 + BPHYT_RS14130 0.12 -0.2 3,226,805 + BPHYT_RS14130 0.12 -0.5 3,226,814 + BPHYT_RS14130 0.13 -0.3 3,226,868 + BPHYT_RS14130 0.20 -1.9 3,227,297 + BPHYT_RS14130 0.70 -0.1 3,227,297 + BPHYT_RS14130 0.70 +0.4 3,227,297 + BPHYT_RS14130 0.70 +0.7 3,227,297 + BPHYT_RS14130 0.70 -0.2 3,227,408 + BPHYT_RS14130 0.83 +1.2 3,227,544 + -0.0 3,227,569 + -0.6 3,227,570 - +0.4 3,227,570 - -2.9 3,227,689 + BPHYT_RS14135 0.13 -0.8 3,227,689 + BPHYT_RS14135 0.13 -0.4 3,228,300 - BPHYT_RS14135 0.82 -2.0 3,228,444 - -1.4 3,228,619 + BPHYT_RS14140 0.16 -3.8 3,228,619 + BPHYT_RS14140 0.16 -0.0 3,228,620 - BPHYT_RS14140 0.16 -1.3 3,228,997 - BPHYT_RS14140 0.53 -1.2 3,229,194 + BPHYT_RS14140 0.73 +0.3 3,229,195 - BPHYT_RS14140 0.73 -0.2 3,229,195 - BPHYT_RS14140 0.73 -0.7
Or see this region's nucleotide sequence