Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS06155 and BPHYT_RS06160 are separated by 211 nucleotides BPHYT_RS06160 and BPHYT_RS06165 are separated by 31 nucleotides
BPHYT_RS06155: BPHYT_RS06155 - DEAD/DEAH box helicase, at 1,401,205 to 1,402,674
_RS06155
BPHYT_RS06160: BPHYT_RS06160 - glutamyl-Q tRNA(Asp) ligase, at 1,402,886 to 1,403,776
_RS06160
BPHYT_RS06165: BPHYT_RS06165 - rhodanese, at 1,403,808 to 1,404,671
_RS06165
Position (kb) 1402
1403
1404 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1401.914 kb on - strand, within BPHYT_RS06155 at 1401.999 kb on + strand, within BPHYT_RS06155 at 1402.000 kb on - strand, within BPHYT_RS06155 at 1402.000 kb on - strand, within BPHYT_RS06155 at 1402.225 kb on + strand, within BPHYT_RS06155 at 1402.225 kb on + strand, within BPHYT_RS06155 at 1402.225 kb on + strand, within BPHYT_RS06155 at 1402.226 kb on - strand, within BPHYT_RS06155 at 1402.226 kb on - strand, within BPHYT_RS06155 at 1402.535 kb on - strand at 1402.802 kb on + strand at 1402.802 kb on + strand at 1402.898 kb on + strand at 1402.939 kb on - strand at 1402.950 kb on - strand at 1403.106 kb on + strand, within BPHYT_RS06160 at 1403.142 kb on + strand, within BPHYT_RS06160 at 1403.143 kb on - strand, within BPHYT_RS06160 at 1403.194 kb on + strand, within BPHYT_RS06160 at 1403.194 kb on + strand, within BPHYT_RS06160 at 1403.194 kb on + strand, within BPHYT_RS06160 at 1403.429 kb on - strand, within BPHYT_RS06160 at 1403.491 kb on - strand, within BPHYT_RS06160 at 1403.870 kb on - strand at 1403.936 kb on + strand, within BPHYT_RS06165 at 1403.937 kb on - strand, within BPHYT_RS06165 at 1403.937 kb on - strand, within BPHYT_RS06165 at 1403.955 kb on - strand, within BPHYT_RS06165 at 1403.976 kb on + strand, within BPHYT_RS06165 at 1403.976 kb on + strand, within BPHYT_RS06165 at 1404.049 kb on + strand, within BPHYT_RS06165 at 1404.049 kb on + strand, within BPHYT_RS06165 at 1404.314 kb on + strand, within BPHYT_RS06165 at 1404.315 kb on - strand, within BPHYT_RS06165 at 1404.490 kb on + strand, within BPHYT_RS06165 at 1404.665 kb on + strand at 1404.666 kb on - strand at 1404.767 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 1,401,914 - BPHYT_RS06155 0.48 -0.1 1,401,999 + BPHYT_RS06155 0.54 -0.7 1,402,000 - BPHYT_RS06155 0.54 -1.4 1,402,000 - BPHYT_RS06155 0.54 -0.4 1,402,225 + BPHYT_RS06155 0.69 -0.3 1,402,225 + BPHYT_RS06155 0.69 -0.6 1,402,225 + BPHYT_RS06155 0.69 -1.1 1,402,226 - BPHYT_RS06155 0.69 +2.1 1,402,226 - BPHYT_RS06155 0.69 -3.0 1,402,535 - +0.1 1,402,802 + +2.0 1,402,802 + +0.2 1,402,898 + +0.2 1,402,939 - -0.9 1,402,950 - -0.1 1,403,106 + BPHYT_RS06160 0.25 -1.8 1,403,142 + BPHYT_RS06160 0.29 -1.5 1,403,143 - BPHYT_RS06160 0.29 -0.9 1,403,194 + BPHYT_RS06160 0.35 -0.6 1,403,194 + BPHYT_RS06160 0.35 -0.9 1,403,194 + BPHYT_RS06160 0.35 -3.0 1,403,429 - BPHYT_RS06160 0.61 +0.7 1,403,491 - BPHYT_RS06160 0.68 -0.7 1,403,870 - -0.9 1,403,936 + BPHYT_RS06165 0.15 -1.8 1,403,937 - BPHYT_RS06165 0.15 -0.1 1,403,937 - BPHYT_RS06165 0.15 -2.2 1,403,955 - BPHYT_RS06165 0.17 -0.2 1,403,976 + BPHYT_RS06165 0.19 -1.2 1,403,976 + BPHYT_RS06165 0.19 -2.0 1,404,049 + BPHYT_RS06165 0.28 -2.0 1,404,049 + BPHYT_RS06165 0.28 -0.2 1,404,314 + BPHYT_RS06165 0.59 +1.3 1,404,315 - BPHYT_RS06165 0.59 +0.0 1,404,490 + BPHYT_RS06165 0.79 -0.3 1,404,665 + +0.5 1,404,666 - -0.3 1,404,767 - +0.0
Or see this region's nucleotide sequence