Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04490 and BPHYT_RS04495 are separated by 4 nucleotides BPHYT_RS04495 and BPHYT_RS04500 are separated by 11 nucleotides BPHYT_RS04500 and BPHYT_RS04505 overlap by 14 nucleotides BPHYT_RS04505 and BPHYT_RS04510 are separated by 2 nucleotides
BPHYT_RS04490: BPHYT_RS04490 - hypothetical protein, at 1,038,967 to 1,039,677
_RS04490
BPHYT_RS04495: BPHYT_RS04495 - urease accessory protein UreG, at 1,039,682 to 1,040,335
_RS04495
BPHYT_RS04500: BPHYT_RS04500 - urease accessory protein UreF, at 1,040,347 to 1,041,027
_RS04500
BPHYT_RS04505: BPHYT_RS04505 - urease accessory protein UreE, at 1,041,014 to 1,041,697
_RS04505
BPHYT_RS04510: BPHYT_RS04510 - urease subunit alpha, at 1,041,700 to 1,043,406
_RS04510
Position (kb)
1040
1041
1042 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1039.348 kb on + strand, within BPHYT_RS04490 at 1039.509 kb on + strand, within BPHYT_RS04490 at 1039.891 kb on + strand, within BPHYT_RS04495 at 1039.930 kb on - strand, within BPHYT_RS04495 at 1039.930 kb on - strand, within BPHYT_RS04495 at 1040.166 kb on + strand, within BPHYT_RS04495 at 1040.166 kb on + strand, within BPHYT_RS04495 at 1040.166 kb on + strand, within BPHYT_RS04495 at 1040.167 kb on - strand, within BPHYT_RS04495 at 1040.196 kb on + strand, within BPHYT_RS04495 at 1040.197 kb on - strand, within BPHYT_RS04495 at 1040.197 kb on - strand, within BPHYT_RS04495 at 1040.348 kb on + strand at 1040.369 kb on + strand at 1040.609 kb on + strand, within BPHYT_RS04500 at 1040.958 kb on - strand, within BPHYT_RS04500 at 1041.411 kb on + strand, within BPHYT_RS04505 at 1041.512 kb on + strand, within BPHYT_RS04505 at 1041.512 kb on + strand, within BPHYT_RS04505 at 1041.513 kb on - strand, within BPHYT_RS04505 at 1041.513 kb on - strand, within BPHYT_RS04505 at 1041.713 kb on + strand at 1041.850 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 1,039,348 + BPHYT_RS04490 0.54 +0.5 1,039,509 + BPHYT_RS04490 0.76 +1.0 1,039,891 + BPHYT_RS04495 0.32 -0.6 1,039,930 - BPHYT_RS04495 0.38 -2.8 1,039,930 - BPHYT_RS04495 0.38 -0.7 1,040,166 + BPHYT_RS04495 0.74 -0.2 1,040,166 + BPHYT_RS04495 0.74 +0.3 1,040,166 + BPHYT_RS04495 0.74 +0.5 1,040,167 - BPHYT_RS04495 0.74 -0.1 1,040,196 + BPHYT_RS04495 0.79 -0.1 1,040,197 - BPHYT_RS04495 0.79 -0.5 1,040,197 - BPHYT_RS04495 0.79 +0.4 1,040,348 + +2.0 1,040,369 + +0.5 1,040,609 + BPHYT_RS04500 0.38 +0.9 1,040,958 - BPHYT_RS04500 0.90 +1.0 1,041,411 + BPHYT_RS04505 0.58 -2.0 1,041,512 + BPHYT_RS04505 0.73 -1.9 1,041,512 + BPHYT_RS04505 0.73 -0.5 1,041,513 - BPHYT_RS04505 0.73 -3.7 1,041,513 - BPHYT_RS04505 0.73 +0.2 1,041,713 + -0.7 1,041,850 - -0.2
Or see this region's nucleotide sequence