Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04500

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS04490 and BPHYT_RS04495 are separated by 4 nucleotidesBPHYT_RS04495 and BPHYT_RS04500 are separated by 11 nucleotidesBPHYT_RS04500 and BPHYT_RS04505 overlap by 14 nucleotidesBPHYT_RS04505 and BPHYT_RS04510 are separated by 2 nucleotides BPHYT_RS04490: BPHYT_RS04490 - hypothetical protein, at 1,038,967 to 1,039,677 _RS04490 BPHYT_RS04495: BPHYT_RS04495 - urease accessory protein UreG, at 1,039,682 to 1,040,335 _RS04495 BPHYT_RS04500: BPHYT_RS04500 - urease accessory protein UreF, at 1,040,347 to 1,041,027 _RS04500 BPHYT_RS04505: BPHYT_RS04505 - urease accessory protein UreE, at 1,041,014 to 1,041,697 _RS04505 BPHYT_RS04510: BPHYT_RS04510 - urease subunit alpha, at 1,041,700 to 1,043,406 _RS04510 Position (kb) 1040 1041 1042Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1039.348 kb on + strand, within BPHYT_RS04490at 1039.509 kb on + strand, within BPHYT_RS04490at 1039.891 kb on + strand, within BPHYT_RS04495at 1039.930 kb on - strand, within BPHYT_RS04495at 1039.930 kb on - strand, within BPHYT_RS04495at 1040.166 kb on + strand, within BPHYT_RS04495at 1040.166 kb on + strand, within BPHYT_RS04495at 1040.166 kb on + strand, within BPHYT_RS04495at 1040.167 kb on - strand, within BPHYT_RS04495at 1040.196 kb on + strand, within BPHYT_RS04495at 1040.197 kb on - strand, within BPHYT_RS04495at 1040.197 kb on - strand, within BPHYT_RS04495at 1040.348 kb on + strandat 1040.369 kb on + strandat 1040.609 kb on + strand, within BPHYT_RS04500at 1040.958 kb on - strand, within BPHYT_RS04500at 1041.411 kb on + strand, within BPHYT_RS04505at 1041.512 kb on + strand, within BPHYT_RS04505at 1041.512 kb on + strand, within BPHYT_RS04505at 1041.513 kb on - strand, within BPHYT_RS04505at 1041.513 kb on - strand, within BPHYT_RS04505at 1041.713 kb on + strandat 1041.850 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
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1,039,348 + BPHYT_RS04490 0.54 +0.5
1,039,509 + BPHYT_RS04490 0.76 +1.0
1,039,891 + BPHYT_RS04495 0.32 -0.6
1,039,930 - BPHYT_RS04495 0.38 -2.8
1,039,930 - BPHYT_RS04495 0.38 -0.7
1,040,166 + BPHYT_RS04495 0.74 -0.2
1,040,166 + BPHYT_RS04495 0.74 +0.3
1,040,166 + BPHYT_RS04495 0.74 +0.5
1,040,167 - BPHYT_RS04495 0.74 -0.1
1,040,196 + BPHYT_RS04495 0.79 -0.1
1,040,197 - BPHYT_RS04495 0.79 -0.5
1,040,197 - BPHYT_RS04495 0.79 +0.4
1,040,348 + +2.0
1,040,369 + +0.5
1,040,609 + BPHYT_RS04500 0.38 +0.9
1,040,958 - BPHYT_RS04500 0.90 +1.0
1,041,411 + BPHYT_RS04505 0.58 -2.0
1,041,512 + BPHYT_RS04505 0.73 -1.9
1,041,512 + BPHYT_RS04505 0.73 -0.5
1,041,513 - BPHYT_RS04505 0.73 -3.7
1,041,513 - BPHYT_RS04505 0.73 +0.2
1,041,713 + -0.7
1,041,850 - -0.2

Or see this region's nucleotide sequence