Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04330 and BPHYT_RS04335 are separated by 53 nucleotides BPHYT_RS04335 and BPHYT_RS04340 overlap by 4 nucleotides BPHYT_RS04340 and BPHYT_RS04345 are separated by 13 nucleotides
BPHYT_RS04330: BPHYT_RS04330 - hypothetical protein, at 997,214 to 998,356
_RS04330
BPHYT_RS04335: BPHYT_RS04335 - membrane protein, at 998,410 to 998,835
_RS04335
BPHYT_RS04340: BPHYT_RS04340 - hypothetical protein, at 998,832 to 1,000,115
_RS04340
BPHYT_RS04345: BPHYT_RS04345 - NAD-dependent epimerase/dehydratase, at 1,000,129 to 1,001,067
_RS04345
Position (kb) 998
999
1000
1001 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 998.117 kb on + strand, within BPHYT_RS04330 at 998.203 kb on + strand, within BPHYT_RS04330 at 998.203 kb on + strand, within BPHYT_RS04330 at 998.204 kb on - strand, within BPHYT_RS04330 at 998.215 kb on - strand, within BPHYT_RS04330 at 998.215 kb on - strand, within BPHYT_RS04330 at 998.528 kb on + strand, within BPHYT_RS04335 at 998.528 kb on + strand, within BPHYT_RS04335 at 998.529 kb on - strand, within BPHYT_RS04335 at 998.836 kb on - strand at 998.836 kb on - strand at 998.899 kb on + strand at 998.900 kb on - strand at 998.900 kb on - strand at 998.902 kb on + strand at 998.965 kb on + strand, within BPHYT_RS04340 at 999.212 kb on + strand, within BPHYT_RS04340 at 999.343 kb on + strand, within BPHYT_RS04340 at 999.494 kb on + strand, within BPHYT_RS04340 at 999.556 kb on + strand, within BPHYT_RS04340 at 999.557 kb on - strand, within BPHYT_RS04340 at 999.848 kb on - strand, within BPHYT_RS04340 at 999.848 kb on - strand, within BPHYT_RS04340 at 1000.058 kb on - strand at 1001.112 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 998,117 + BPHYT_RS04330 0.79 -1.4 998,203 + BPHYT_RS04330 0.87 -0.1 998,203 + BPHYT_RS04330 0.87 -2.1 998,204 - BPHYT_RS04330 0.87 +0.5 998,215 - BPHYT_RS04330 0.88 +2.1 998,215 - BPHYT_RS04330 0.88 +0.7 998,528 + BPHYT_RS04335 0.28 +1.6 998,528 + BPHYT_RS04335 0.28 +2.0 998,529 - BPHYT_RS04335 0.28 -0.5 998,836 - -1.2 998,836 - +0.3 998,899 + -1.1 998,900 - -0.9 998,900 - +0.4 998,902 + +2.7 998,965 + BPHYT_RS04340 0.10 -0.7 999,212 + BPHYT_RS04340 0.30 +0.7 999,343 + BPHYT_RS04340 0.40 +3.1 999,494 + BPHYT_RS04340 0.52 +1.6 999,556 + BPHYT_RS04340 0.56 -1.2 999,557 - BPHYT_RS04340 0.56 +1.0 999,848 - BPHYT_RS04340 0.79 +3.1 999,848 - BPHYT_RS04340 0.79 -3.2 1,000,058 - +0.5 1,001,112 - +0.4
Or see this region's nucleotide sequence