Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03940 and BPHYT_RS03945 are separated by 312 nucleotides BPHYT_RS03945 and BPHYT_RS03950 are separated by 357 nucleotides
BPHYT_RS03940: BPHYT_RS03940 - MFS transporter, at 890,855 to 892,339
_RS03940
BPHYT_RS03945: BPHYT_RS03945 - hypothetical protein, at 892,652 to 893,005
_RS03945
BPHYT_RS03950: BPHYT_RS03950 - hypothetical protein, at 893,363 to 895,339
_RS03950
Position (kb) 892
893
894 Strain fitness (log2 ratio) -2
-1
0
1 at 891.822 kb on - strand, within BPHYT_RS03940 at 891.869 kb on - strand, within BPHYT_RS03940 at 892.091 kb on + strand, within BPHYT_RS03940 at 892.097 kb on + strand, within BPHYT_RS03940 at 892.249 kb on + strand at 892.337 kb on + strand at 892.338 kb on - strand at 892.365 kb on - strand at 892.559 kb on + strand at 892.568 kb on + strand at 892.568 kb on + strand at 892.569 kb on - strand at 892.569 kb on - strand at 892.597 kb on + strand at 892.598 kb on - strand at 892.653 kb on + strand at 892.653 kb on + strand at 892.654 kb on - strand at 892.654 kb on - strand at 892.654 kb on - strand at 892.823 kb on + strand, within BPHYT_RS03945 at 892.896 kb on - strand, within BPHYT_RS03945 at 893.112 kb on + strand at 893.191 kb on - strand at 893.193 kb on - strand at 893.364 kb on + strand at 893.364 kb on + strand at 893.365 kb on - strand at 893.433 kb on + strand at 893.434 kb on - strand at 893.434 kb on - strand at 893.478 kb on + strand at 893.479 kb on - strand at 893.572 kb on - strand, within BPHYT_RS03950 at 893.857 kb on - strand, within BPHYT_RS03950 at 893.865 kb on + strand, within BPHYT_RS03950 at 893.866 kb on - strand, within BPHYT_RS03950 at 893.866 kb on - strand, within BPHYT_RS03950 at 893.931 kb on + strand, within BPHYT_RS03950 at 893.931 kb on + strand, within BPHYT_RS03950 at 893.932 kb on - strand, within BPHYT_RS03950
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 891,822 - BPHYT_RS03940 0.65 -0.5 891,869 - BPHYT_RS03940 0.68 -0.9 892,091 + BPHYT_RS03940 0.83 -0.0 892,097 + BPHYT_RS03940 0.84 +0.0 892,249 + +0.6 892,337 + -0.4 892,338 - -0.3 892,365 - +0.6 892,559 + -0.3 892,568 + +1.6 892,568 + -0.1 892,569 - -0.1 892,569 - +1.3 892,597 + +0.2 892,598 - -0.2 892,653 + +0.0 892,653 + +0.0 892,654 - -0.4 892,654 - -0.9 892,654 - -0.4 892,823 + BPHYT_RS03945 0.48 +1.4 892,896 - BPHYT_RS03945 0.69 +1.6 893,112 + -0.1 893,191 - +0.0 893,193 - -2.6 893,364 + -0.4 893,364 + -0.1 893,365 - -0.1 893,433 + +1.4 893,434 - +0.5 893,434 - -0.9 893,478 + -0.1 893,479 - +0.4 893,572 - BPHYT_RS03950 0.11 -0.2 893,857 - BPHYT_RS03950 0.25 -1.1 893,865 + BPHYT_RS03950 0.25 +0.4 893,866 - BPHYT_RS03950 0.25 -1.4 893,866 - BPHYT_RS03950 0.25 +0.9 893,931 + BPHYT_RS03950 0.29 -2.1 893,931 + BPHYT_RS03950 0.29 -1.3 893,932 - BPHYT_RS03950 0.29 +0.3
Or see this region's nucleotide sequence