Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03915 and BPHYT_RS03920 are separated by 27 nucleotides BPHYT_RS03920 and BPHYT_RS03925 are separated by 306 nucleotides BPHYT_RS03925 and BPHYT_RS03930 are separated by 234 nucleotides
BPHYT_RS03915: BPHYT_RS03915 - hypothetical protein, at 886,214 to 886,465
_RS03915
BPHYT_RS03920: BPHYT_RS03920 - lysine transporter LysE, at 886,493 to 887,134
_RS03920
BPHYT_RS03925: BPHYT_RS03925 - LysR family transcriptional regulator, at 887,441 to 888,334
_RS03925
BPHYT_RS03930: BPHYT_RS03930 - 3-hydroxy-3-methylglutaryl-CoA lyase, at 888,569 to 889,546
_RS03930
Position (kb) 887
888
889 Strain fitness (log2 ratio) -2
-1
0
1
2 at 886.774 kb on - strand, within BPHYT_RS03920 at 886.878 kb on + strand, within BPHYT_RS03920 at 886.879 kb on - strand, within BPHYT_RS03920 at 886.921 kb on - strand, within BPHYT_RS03920 at 887.139 kb on - strand at 887.498 kb on - strand at 887.498 kb on - strand at 887.702 kb on + strand, within BPHYT_RS03925 at 888.099 kb on - strand, within BPHYT_RS03925 at 888.107 kb on + strand, within BPHYT_RS03925 at 888.108 kb on - strand, within BPHYT_RS03925 at 888.206 kb on + strand, within BPHYT_RS03925 at 888.561 kb on - strand at 888.786 kb on - strand, within BPHYT_RS03930 at 888.896 kb on - strand, within BPHYT_RS03930 at 888.970 kb on + strand, within BPHYT_RS03930
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 886,774 - BPHYT_RS03920 0.44 -0.2 886,878 + BPHYT_RS03920 0.60 -1.6 886,879 - BPHYT_RS03920 0.60 -0.7 886,921 - BPHYT_RS03920 0.67 -0.3 887,139 - -0.3 887,498 - -0.8 887,498 - +1.8 887,702 + BPHYT_RS03925 0.29 -2.6 888,099 - BPHYT_RS03925 0.74 -0.5 888,107 + BPHYT_RS03925 0.74 -0.7 888,108 - BPHYT_RS03925 0.75 -1.1 888,206 + BPHYT_RS03925 0.86 -1.1 888,561 - -0.9 888,786 - BPHYT_RS03930 0.22 +0.3 888,896 - BPHYT_RS03930 0.33 -0.7 888,970 + BPHYT_RS03930 0.41 -1.4
Or see this region's nucleotide sequence