Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS03470

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS03465 and BPHYT_RS03470 are separated by 787 nucleotidesBPHYT_RS03470 and BPHYT_RS03475 are separated by 429 nucleotides BPHYT_RS03465: BPHYT_RS03465 - hypothetical protein, at 780,904 to 781,650 _RS03465 BPHYT_RS03470: BPHYT_RS03470 - LysR family transcriptional regulator, at 782,438 to 783,397 _RS03470 BPHYT_RS03475: BPHYT_RS03475 - catalase, at 783,827 to 785,281 _RS03475 Position (kb) 782 783 784Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 781.443 kb on + strand, within BPHYT_RS03465at 781.528 kb on - strand, within BPHYT_RS03465at 781.707 kb on - strandat 781.890 kb on + strandat 782.082 kb on - strandat 782.082 kb on - strandat 782.212 kb on - strandat 782.212 kb on - strandat 782.258 kb on + strandat 782.258 kb on + strandat 782.289 kb on + strandat 782.388 kb on + strandat 782.394 kb on + strandat 782.397 kb on - strandat 782.400 kb on + strandat 782.400 kb on + strandat 782.459 kb on + strandat 782.459 kb on + strandat 782.460 kb on - strandat 782.460 kb on - strandat 782.730 kb on + strand, within BPHYT_RS03470at 782.732 kb on + strand, within BPHYT_RS03470at 782.733 kb on - strand, within BPHYT_RS03470at 782.735 kb on - strand, within BPHYT_RS03470at 783.166 kb on + strand, within BPHYT_RS03470at 783.167 kb on - strand, within BPHYT_RS03470at 783.395 kb on + strandat 783.395 kb on + strandat 783.527 kb on - strandat 783.709 kb on + strandat 783.710 kb on - strandat 783.768 kb on + strandat 783.769 kb on - strandat 783.804 kb on + strandat 783.838 kb on + strandat 783.839 kb on - strandat 783.839 kb on - strandat 784.034 kb on - strand, within BPHYT_RS03475at 784.034 kb on - strand, within BPHYT_RS03475at 784.172 kb on + strand, within BPHYT_RS03475at 784.280 kb on + strand, within BPHYT_RS03475

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
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781,443 + BPHYT_RS03465 0.72 -4.1
781,528 - BPHYT_RS03465 0.84 +0.1
781,707 - -0.4
781,890 + -0.8
782,082 - +0.1
782,082 - -0.6
782,212 - +0.6
782,212 - -0.2
782,258 + -0.5
782,258 + +1.2
782,289 + -0.3
782,388 + -0.1
782,394 + +1.0
782,397 - -0.4
782,400 + +0.7
782,400 + -0.0
782,459 + +1.9
782,459 + +1.1
782,460 - +0.4
782,460 - -0.1
782,730 + BPHYT_RS03470 0.30 +1.3
782,732 + BPHYT_RS03470 0.31 +1.3
782,733 - BPHYT_RS03470 0.31 +1.5
782,735 - BPHYT_RS03470 0.31 +1.5
783,166 + BPHYT_RS03470 0.76 +0.3
783,167 - BPHYT_RS03470 0.76 +3.4
783,395 + +0.5
783,395 + -0.2
783,527 - -0.5
783,709 + +0.5
783,710 - -0.8
783,768 + +2.2
783,769 - -2.3
783,804 + -1.2
783,838 + -1.2
783,839 - -2.9
783,839 - -4.8
784,034 - BPHYT_RS03475 0.14 -1.5
784,034 - BPHYT_RS03475 0.14 -3.1
784,172 + BPHYT_RS03475 0.24 -2.7
784,280 + BPHYT_RS03475 0.31 -2.2

Or see this region's nucleotide sequence