Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS02590

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS02585 and BPHYT_RS02590 are separated by 304 nucleotidesBPHYT_RS02590 and BPHYT_RS02595 are separated by 138 nucleotidesBPHYT_RS02595 and BPHYT_RS02600 overlap by 4 nucleotidesBPHYT_RS02600 and BPHYT_RS02605 are separated by 145 nucleotides BPHYT_RS02585: BPHYT_RS02585 - peptidase S41, at 586,824 to 588,392 _RS02585 BPHYT_RS02590: BPHYT_RS02590 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase, at 588,697 to 589,443 _RS02590 BPHYT_RS02595: BPHYT_RS02595 - sulfurtransferase, at 589,582 to 590,007 _RS02595 BPHYT_RS02600: BPHYT_RS02600 - glutaredoxin, at 590,004 to 590,267 _RS02600 BPHYT_RS02605: BPHYT_RS02605 - protein-export protein SecB, at 590,413 to 590,883 _RS02605 Position (kb) 588 589 590Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 588.451 kb on - strandat 588.451 kb on - strandat 588.451 kb on - strandat 588.452 kb on + strandat 588.452 kb on + strandat 588.452 kb on + strandat 588.452 kb on + strandat 588.453 kb on - strandat 588.453 kb on - strandat 588.550 kb on + strandat 588.550 kb on + strandat 588.550 kb on + strandat 588.550 kb on + strandat 588.551 kb on - strandat 588.551 kb on - strandat 588.764 kb on + strandat 588.764 kb on + strandat 588.764 kb on + strandat 588.765 kb on - strandat 588.803 kb on + strand, within BPHYT_RS02590at 588.803 kb on + strand, within BPHYT_RS02590at 588.803 kb on + strand, within BPHYT_RS02590at 588.804 kb on - strand, within BPHYT_RS02590at 588.804 kb on - strand, within BPHYT_RS02590at 588.858 kb on + strand, within BPHYT_RS02590at 588.858 kb on + strand, within BPHYT_RS02590at 588.859 kb on - strand, within BPHYT_RS02590at 588.870 kb on - strand, within BPHYT_RS02590at 588.870 kb on - strand, within BPHYT_RS02590at 589.046 kb on + strand, within BPHYT_RS02590at 589.094 kb on + strand, within BPHYT_RS02590at 589.217 kb on + strand, within BPHYT_RS02590at 589.218 kb on - strand, within BPHYT_RS02590at 589.439 kb on + strandat 589.439 kb on + strandat 589.530 kb on + strandat 589.530 kb on + strandat 589.614 kb on - strandat 589.614 kb on - strandat 589.866 kb on - strand, within BPHYT_RS02595at 589.903 kb on - strand, within BPHYT_RS02595at 590.022 kb on + strandat 590.022 kb on + strandat 590.022 kb on + strandat 590.022 kb on + strandat 590.022 kb on + strandat 590.101 kb on + strand, within BPHYT_RS02600at 590.389 kb on + strandat 590.389 kb on + strandat 590.389 kb on + strandat 590.389 kb on + strandat 590.390 kb on - strandat 590.390 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
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588,451 - +0.3
588,451 - -0.4
588,451 - -2.5
588,452 + +0.9
588,452 + -0.5
588,452 + +0.6
588,452 + -1.4
588,453 - -1.4
588,453 - +0.1
588,550 + +0.3
588,550 + +0.3
588,550 + +1.5
588,550 + -0.4
588,551 - +0.7
588,551 - -1.1
588,764 + -1.6
588,764 + -2.0
588,764 + -3.0
588,765 - -2.4
588,803 + BPHYT_RS02590 0.14 -1.7
588,803 + BPHYT_RS02590 0.14 -2.4
588,803 + BPHYT_RS02590 0.14 -3.0
588,804 - BPHYT_RS02590 0.14 -2.3
588,804 - BPHYT_RS02590 0.14 -1.4
588,858 + BPHYT_RS02590 0.22 -0.2
588,858 + BPHYT_RS02590 0.22 -0.9
588,859 - BPHYT_RS02590 0.22 +0.9
588,870 - BPHYT_RS02590 0.23 -2.1
588,870 - BPHYT_RS02590 0.23 -2.7
589,046 + BPHYT_RS02590 0.47 -1.1
589,094 + BPHYT_RS02590 0.53 -3.2
589,217 + BPHYT_RS02590 0.70 -0.1
589,218 - BPHYT_RS02590 0.70 +1.3
589,439 + -2.3
589,439 + -1.1
589,530 + -0.7
589,530 + -0.1
589,614 - +0.7
589,614 - -0.4
589,866 - BPHYT_RS02595 0.67 +0.8
589,903 - BPHYT_RS02595 0.75 +1.8
590,022 + +0.2
590,022 + -0.3
590,022 + +3.3
590,022 + -0.5
590,022 + -0.2
590,101 + BPHYT_RS02600 0.37 +0.3
590,389 + +0.5
590,389 + +0.9
590,389 + -0.2
590,389 + -0.2
590,390 - -0.5
590,390 - -0.5

Or see this region's nucleotide sequence