Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02585 and BPHYT_RS02590 are separated by 304 nucleotides BPHYT_RS02590 and BPHYT_RS02595 are separated by 138 nucleotides BPHYT_RS02595 and BPHYT_RS02600 overlap by 4 nucleotides BPHYT_RS02600 and BPHYT_RS02605 are separated by 145 nucleotides
BPHYT_RS02585: BPHYT_RS02585 - peptidase S41, at 586,824 to 588,392
_RS02585
BPHYT_RS02590: BPHYT_RS02590 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase, at 588,697 to 589,443
_RS02590
BPHYT_RS02595: BPHYT_RS02595 - sulfurtransferase, at 589,582 to 590,007
_RS02595
BPHYT_RS02600: BPHYT_RS02600 - glutaredoxin, at 590,004 to 590,267
_RS02600
BPHYT_RS02605: BPHYT_RS02605 - protein-export protein SecB, at 590,413 to 590,883
_RS02605
Position (kb) 588
589
590 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 588.451 kb on - strand at 588.451 kb on - strand at 588.451 kb on - strand at 588.452 kb on + strand at 588.452 kb on + strand at 588.452 kb on + strand at 588.452 kb on + strand at 588.453 kb on - strand at 588.453 kb on - strand at 588.550 kb on + strand at 588.550 kb on + strand at 588.550 kb on + strand at 588.550 kb on + strand at 588.551 kb on - strand at 588.551 kb on - strand at 588.764 kb on + strand at 588.764 kb on + strand at 588.764 kb on + strand at 588.765 kb on - strand at 588.803 kb on + strand, within BPHYT_RS02590 at 588.803 kb on + strand, within BPHYT_RS02590 at 588.803 kb on + strand, within BPHYT_RS02590 at 588.804 kb on - strand, within BPHYT_RS02590 at 588.804 kb on - strand, within BPHYT_RS02590 at 588.858 kb on + strand, within BPHYT_RS02590 at 588.858 kb on + strand, within BPHYT_RS02590 at 588.859 kb on - strand, within BPHYT_RS02590 at 588.870 kb on - strand, within BPHYT_RS02590 at 588.870 kb on - strand, within BPHYT_RS02590 at 589.046 kb on + strand, within BPHYT_RS02590 at 589.094 kb on + strand, within BPHYT_RS02590 at 589.217 kb on + strand, within BPHYT_RS02590 at 589.218 kb on - strand, within BPHYT_RS02590 at 589.439 kb on + strand at 589.439 kb on + strand at 589.530 kb on + strand at 589.530 kb on + strand at 589.614 kb on - strand at 589.614 kb on - strand at 589.866 kb on - strand, within BPHYT_RS02595 at 589.903 kb on - strand, within BPHYT_RS02595 at 590.022 kb on + strand at 590.022 kb on + strand at 590.022 kb on + strand at 590.022 kb on + strand at 590.022 kb on + strand at 590.101 kb on + strand, within BPHYT_RS02600 at 590.389 kb on + strand at 590.389 kb on + strand at 590.389 kb on + strand at 590.389 kb on + strand at 590.390 kb on - strand at 590.390 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 588,451 - +0.3 588,451 - -0.4 588,451 - -2.5 588,452 + +0.9 588,452 + -0.5 588,452 + +0.6 588,452 + -1.4 588,453 - -1.4 588,453 - +0.1 588,550 + +0.3 588,550 + +0.3 588,550 + +1.5 588,550 + -0.4 588,551 - +0.7 588,551 - -1.1 588,764 + -1.6 588,764 + -2.0 588,764 + -3.0 588,765 - -2.4 588,803 + BPHYT_RS02590 0.14 -1.7 588,803 + BPHYT_RS02590 0.14 -2.4 588,803 + BPHYT_RS02590 0.14 -3.0 588,804 - BPHYT_RS02590 0.14 -2.3 588,804 - BPHYT_RS02590 0.14 -1.4 588,858 + BPHYT_RS02590 0.22 -0.2 588,858 + BPHYT_RS02590 0.22 -0.9 588,859 - BPHYT_RS02590 0.22 +0.9 588,870 - BPHYT_RS02590 0.23 -2.1 588,870 - BPHYT_RS02590 0.23 -2.7 589,046 + BPHYT_RS02590 0.47 -1.1 589,094 + BPHYT_RS02590 0.53 -3.2 589,217 + BPHYT_RS02590 0.70 -0.1 589,218 - BPHYT_RS02590 0.70 +1.3 589,439 + -2.3 589,439 + -1.1 589,530 + -0.7 589,530 + -0.1 589,614 - +0.7 589,614 - -0.4 589,866 - BPHYT_RS02595 0.67 +0.8 589,903 - BPHYT_RS02595 0.75 +1.8 590,022 + +0.2 590,022 + -0.3 590,022 + +3.3 590,022 + -0.5 590,022 + -0.2 590,101 + BPHYT_RS02600 0.37 +0.3 590,389 + +0.5 590,389 + +0.9 590,389 + -0.2 590,389 + -0.2 590,390 - -0.5 590,390 - -0.5
Or see this region's nucleotide sequence