Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS01825

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS01820 and BPHYT_RS01825 are separated by 371 nucleotidesBPHYT_RS01825 and BPHYT_RS01830 are separated by 113 nucleotides BPHYT_RS01820: BPHYT_RS01820 - sugar ABC transporter ATP-binding protein, at 412,723 to 414,357 _RS01820 BPHYT_RS01825: BPHYT_RS01825 - sugar ABC transporter substrate-binding protein, at 414,729 to 415,748 _RS01825 BPHYT_RS01830: BPHYT_RS01830 - LacI family transcriptional regulator, at 415,862 to 416,914 _RS01830 Position (kb) 414 415 416Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 414.063 kb on - strand, within BPHYT_RS01820at 414.063 kb on - strand, within BPHYT_RS01820at 414.241 kb on + strandat 414.242 kb on - strandat 414.318 kb on + strandat 414.473 kb on + strandat 414.474 kb on - strandat 414.483 kb on - strandat 414.609 kb on - strandat 414.609 kb on - strandat 414.609 kb on - strandat 414.667 kb on - strandat 414.699 kb on + strandat 414.739 kb on + strandat 414.773 kb on - strandat 415.294 kb on + strand, within BPHYT_RS01825at 415.294 kb on + strand, within BPHYT_RS01825at 415.295 kb on - strand, within BPHYT_RS01825at 415.295 kb on - strand, within BPHYT_RS01825at 415.416 kb on + strand, within BPHYT_RS01825at 415.762 kb on - strandat 415.780 kb on - strandat 415.780 kb on - strandat 415.780 kb on - strandat 415.789 kb on + strandat 415.794 kb on + strandat 415.795 kb on - strandat 415.838 kb on + strandat 415.874 kb on - strandat 416.368 kb on + strand, within BPHYT_RS01830at 416.368 kb on + strand, within BPHYT_RS01830at 416.368 kb on + strand, within BPHYT_RS01830at 416.369 kb on - strand, within BPHYT_RS01830at 416.369 kb on - strand, within BPHYT_RS01830at 416.369 kb on - strand, within BPHYT_RS01830at 416.370 kb on + strand, within BPHYT_RS01830at 416.370 kb on + strand, within BPHYT_RS01830at 416.371 kb on - strand, within BPHYT_RS01830at 416.371 kb on - strand, within BPHYT_RS01830at 416.371 kb on - strand, within BPHYT_RS01830at 416.371 kb on - strand, within BPHYT_RS01830at 416.471 kb on - strandat 416.472 kb on + strand, within BPHYT_RS01830at 416.472 kb on + strand, within BPHYT_RS01830at 416.472 kb on + strand, within BPHYT_RS01830at 416.491 kb on + strand, within BPHYT_RS01830at 416.492 kb on - strand, within BPHYT_RS01830at 416.536 kb on - strand, within BPHYT_RS01830at 416.628 kb on + strand, within BPHYT_RS01830at 416.628 kb on + strand, within BPHYT_RS01830at 416.656 kb on - strand, within BPHYT_RS01830at 416.724 kb on + strand, within BPHYT_RS01830at 416.724 kb on + strand, within BPHYT_RS01830

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
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414,063 - BPHYT_RS01820 0.82 +0.8
414,063 - BPHYT_RS01820 0.82 +0.6
414,241 + -0.1
414,242 - -0.6
414,318 + +0.7
414,473 + +0.3
414,474 - +0.4
414,483 - -1.8
414,609 - -1.6
414,609 - -2.0
414,609 - -0.7
414,667 - -0.3
414,699 + +0.1
414,739 + +0.2
414,773 - +0.2
415,294 + BPHYT_RS01825 0.55 +1.3
415,294 + BPHYT_RS01825 0.55 +1.1
415,295 - BPHYT_RS01825 0.55 +3.0
415,295 - BPHYT_RS01825 0.55 -0.8
415,416 + BPHYT_RS01825 0.67 +1.2
415,762 - -1.4
415,780 - -1.5
415,780 - -0.2
415,780 - +0.6
415,789 + -0.7
415,794 + -0.9
415,795 - +0.3
415,838 + -1.4
415,874 - +1.0
416,368 + BPHYT_RS01830 0.48 +0.7
416,368 + BPHYT_RS01830 0.48 -0.2
416,368 + BPHYT_RS01830 0.48 -1.3
416,369 - BPHYT_RS01830 0.48 +0.3
416,369 - BPHYT_RS01830 0.48 -0.4
416,369 - BPHYT_RS01830 0.48 -0.9
416,370 + BPHYT_RS01830 0.48 -0.5
416,370 + BPHYT_RS01830 0.48 +1.0
416,371 - BPHYT_RS01830 0.48 -0.6
416,371 - BPHYT_RS01830 0.48 -0.0
416,371 - BPHYT_RS01830 0.48 -0.1
416,371 - BPHYT_RS01830 0.48 -2.9
416,471 - +1.6
416,472 + BPHYT_RS01830 0.58 -0.2
416,472 + BPHYT_RS01830 0.58 +1.4
416,472 + BPHYT_RS01830 0.58 -0.7
416,491 + BPHYT_RS01830 0.60 +0.6
416,492 - BPHYT_RS01830 0.60 +1.1
416,536 - BPHYT_RS01830 0.64 -0.6
416,628 + BPHYT_RS01830 0.73 -0.4
416,628 + BPHYT_RS01830 0.73 -0.8
416,656 - BPHYT_RS01830 0.75 +1.5
416,724 + BPHYT_RS01830 0.82 +0.7
416,724 + BPHYT_RS01830 0.82 -0.3

Or see this region's nucleotide sequence