Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01820 and BPHYT_RS01825 are separated by 371 nucleotides BPHYT_RS01825 and BPHYT_RS01830 are separated by 113 nucleotides
BPHYT_RS01820: BPHYT_RS01820 - sugar ABC transporter ATP-binding protein, at 412,723 to 414,357
_RS01820
BPHYT_RS01825: BPHYT_RS01825 - sugar ABC transporter substrate-binding protein, at 414,729 to 415,748
_RS01825
BPHYT_RS01830: BPHYT_RS01830 - LacI family transcriptional regulator, at 415,862 to 416,914
_RS01830
Position (kb) 414
415
416 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 414.063 kb on - strand, within BPHYT_RS01820 at 414.063 kb on - strand, within BPHYT_RS01820 at 414.241 kb on + strand at 414.242 kb on - strand at 414.318 kb on + strand at 414.473 kb on + strand at 414.474 kb on - strand at 414.483 kb on - strand at 414.609 kb on - strand at 414.609 kb on - strand at 414.609 kb on - strand at 414.667 kb on - strand at 414.699 kb on + strand at 414.739 kb on + strand at 414.773 kb on - strand at 415.294 kb on + strand, within BPHYT_RS01825 at 415.294 kb on + strand, within BPHYT_RS01825 at 415.295 kb on - strand, within BPHYT_RS01825 at 415.295 kb on - strand, within BPHYT_RS01825 at 415.416 kb on + strand, within BPHYT_RS01825 at 415.762 kb on - strand at 415.780 kb on - strand at 415.780 kb on - strand at 415.780 kb on - strand at 415.789 kb on + strand at 415.794 kb on + strand at 415.795 kb on - strand at 415.838 kb on + strand at 415.874 kb on - strand at 416.368 kb on + strand, within BPHYT_RS01830 at 416.368 kb on + strand, within BPHYT_RS01830 at 416.368 kb on + strand, within BPHYT_RS01830 at 416.369 kb on - strand, within BPHYT_RS01830 at 416.369 kb on - strand, within BPHYT_RS01830 at 416.369 kb on - strand, within BPHYT_RS01830 at 416.370 kb on + strand, within BPHYT_RS01830 at 416.370 kb on + strand, within BPHYT_RS01830 at 416.371 kb on - strand, within BPHYT_RS01830 at 416.371 kb on - strand, within BPHYT_RS01830 at 416.371 kb on - strand, within BPHYT_RS01830 at 416.371 kb on - strand, within BPHYT_RS01830 at 416.471 kb on - strand at 416.472 kb on + strand, within BPHYT_RS01830 at 416.472 kb on + strand, within BPHYT_RS01830 at 416.472 kb on + strand, within BPHYT_RS01830 at 416.491 kb on + strand, within BPHYT_RS01830 at 416.492 kb on - strand, within BPHYT_RS01830 at 416.536 kb on - strand, within BPHYT_RS01830 at 416.628 kb on + strand, within BPHYT_RS01830 at 416.628 kb on + strand, within BPHYT_RS01830 at 416.656 kb on - strand, within BPHYT_RS01830 at 416.724 kb on + strand, within BPHYT_RS01830 at 416.724 kb on + strand, within BPHYT_RS01830
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 414,063 - BPHYT_RS01820 0.82 +0.8 414,063 - BPHYT_RS01820 0.82 +0.6 414,241 + -0.1 414,242 - -0.6 414,318 + +0.7 414,473 + +0.3 414,474 - +0.4 414,483 - -1.8 414,609 - -1.6 414,609 - -2.0 414,609 - -0.7 414,667 - -0.3 414,699 + +0.1 414,739 + +0.2 414,773 - +0.2 415,294 + BPHYT_RS01825 0.55 +1.3 415,294 + BPHYT_RS01825 0.55 +1.1 415,295 - BPHYT_RS01825 0.55 +3.0 415,295 - BPHYT_RS01825 0.55 -0.8 415,416 + BPHYT_RS01825 0.67 +1.2 415,762 - -1.4 415,780 - -1.5 415,780 - -0.2 415,780 - +0.6 415,789 + -0.7 415,794 + -0.9 415,795 - +0.3 415,838 + -1.4 415,874 - +1.0 416,368 + BPHYT_RS01830 0.48 +0.7 416,368 + BPHYT_RS01830 0.48 -0.2 416,368 + BPHYT_RS01830 0.48 -1.3 416,369 - BPHYT_RS01830 0.48 +0.3 416,369 - BPHYT_RS01830 0.48 -0.4 416,369 - BPHYT_RS01830 0.48 -0.9 416,370 + BPHYT_RS01830 0.48 -0.5 416,370 + BPHYT_RS01830 0.48 +1.0 416,371 - BPHYT_RS01830 0.48 -0.6 416,371 - BPHYT_RS01830 0.48 -0.0 416,371 - BPHYT_RS01830 0.48 -0.1 416,371 - BPHYT_RS01830 0.48 -2.9 416,471 - +1.6 416,472 + BPHYT_RS01830 0.58 -0.2 416,472 + BPHYT_RS01830 0.58 +1.4 416,472 + BPHYT_RS01830 0.58 -0.7 416,491 + BPHYT_RS01830 0.60 +0.6 416,492 - BPHYT_RS01830 0.60 +1.1 416,536 - BPHYT_RS01830 0.64 -0.6 416,628 + BPHYT_RS01830 0.73 -0.4 416,628 + BPHYT_RS01830 0.73 -0.8 416,656 - BPHYT_RS01830 0.75 +1.5 416,724 + BPHYT_RS01830 0.82 +0.7 416,724 + BPHYT_RS01830 0.82 -0.3
Or see this region's nucleotide sequence