Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01575 and BPHYT_RS01580 are separated by 61 nucleotides BPHYT_RS01580 and BPHYT_RS01585 are separated by 133 nucleotides BPHYT_RS01585 and BPHYT_RS01590 are separated by 14 nucleotides BPHYT_RS01590 and BPHYT_RS01595 overlap by 4 nucleotides
BPHYT_RS01575: BPHYT_RS01575 - peptidase M48, at 358,342 to 359,142
_RS01575
BPHYT_RS01580: BPHYT_RS01580 - hypothetical protein, at 359,204 to 359,491
_RS01580
BPHYT_RS01585: BPHYT_RS01585 - major facilitator superfamily protein, at 359,625 to 361,019
_RS01585
BPHYT_RS01590: BPHYT_RS01590 - methionine biosynthesis protein MetW, at 361,034 to 361,642
_RS01590
BPHYT_RS01595: BPHYT_RS01595 - homoserine O-acetyltransferase, at 361,639 to 362,784
_RS01595
Position (kb) 359
360
361
362 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 358.856 kb on + strand, within BPHYT_RS01575 at 358.886 kb on + strand, within BPHYT_RS01575 at 358.886 kb on + strand, within BPHYT_RS01575 at 358.886 kb on + strand, within BPHYT_RS01575 at 358.886 kb on + strand, within BPHYT_RS01575 at 358.886 kb on + strand, within BPHYT_RS01575 at 358.887 kb on - strand, within BPHYT_RS01575 at 358.887 kb on - strand, within BPHYT_RS01575 at 358.887 kb on - strand, within BPHYT_RS01575 at 359.052 kb on - strand, within BPHYT_RS01575 at 359.052 kb on - strand, within BPHYT_RS01575 at 359.052 kb on - strand, within BPHYT_RS01575 at 359.159 kb on + strand at 359.160 kb on - strand at 359.160 kb on - strand at 359.160 kb on - strand at 359.304 kb on + strand, within BPHYT_RS01580 at 359.489 kb on + strand at 359.539 kb on + strand at 359.589 kb on + strand at 359.735 kb on - strand at 359.835 kb on - strand, within BPHYT_RS01585 at 359.836 kb on + strand, within BPHYT_RS01585 at 359.836 kb on + strand, within BPHYT_RS01585 at 359.837 kb on - strand, within BPHYT_RS01585 at 359.837 kb on - strand, within BPHYT_RS01585 at 359.837 kb on - strand, within BPHYT_RS01585 at 359.837 kb on - strand, within BPHYT_RS01585 at 359.996 kb on - strand, within BPHYT_RS01585 at 360.372 kb on + strand, within BPHYT_RS01585 at 360.373 kb on - strand, within BPHYT_RS01585 at 360.511 kb on + strand, within BPHYT_RS01585 at 360.711 kb on + strand, within BPHYT_RS01585 at 360.712 kb on - strand, within BPHYT_RS01585 at 360.712 kb on - strand, within BPHYT_RS01585 at 360.803 kb on - strand, within BPHYT_RS01585 at 360.987 kb on - strand at 361.023 kb on + strand at 361.024 kb on - strand at 361.024 kb on - strand at 361.066 kb on + strand at 361.067 kb on - strand at 361.067 kb on - strand at 361.067 kb on - strand at 361.067 kb on - strand at 361.185 kb on - strand, within BPHYT_RS01590 at 361.185 kb on - strand, within BPHYT_RS01590 at 361.209 kb on + strand, within BPHYT_RS01590 at 361.209 kb on + strand, within BPHYT_RS01590 at 361.210 kb on - strand, within BPHYT_RS01590 at 361.621 kb on - strand at 361.663 kb on - strand at 361.663 kb on - strand at 361.663 kb on - strand at 361.674 kb on - strand at 361.694 kb on + strand at 361.751 kb on + strand at 361.752 kb on - strand at 361.752 kb on - strand at 361.757 kb on - strand, within BPHYT_RS01595 at 361.847 kb on + strand, within BPHYT_RS01595 at 361.847 kb on + strand, within BPHYT_RS01595 at 361.940 kb on + strand, within BPHYT_RS01595 at 361.941 kb on - strand, within BPHYT_RS01595 at 361.941 kb on - strand, within BPHYT_RS01595 at 361.958 kb on + strand, within BPHYT_RS01595 at 361.982 kb on + strand, within BPHYT_RS01595 at 361.991 kb on + strand, within BPHYT_RS01595 at 361.992 kb on - strand, within BPHYT_RS01595 at 361.992 kb on - strand, within BPHYT_RS01595
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 358,856 + BPHYT_RS01575 0.64 +1.0 358,886 + BPHYT_RS01575 0.68 -1.6 358,886 + BPHYT_RS01575 0.68 -1.3 358,886 + BPHYT_RS01575 0.68 +0.1 358,886 + BPHYT_RS01575 0.68 -0.0 358,886 + BPHYT_RS01575 0.68 -0.6 358,887 - BPHYT_RS01575 0.68 +0.2 358,887 - BPHYT_RS01575 0.68 -0.5 358,887 - BPHYT_RS01575 0.68 -0.3 359,052 - BPHYT_RS01575 0.89 -0.7 359,052 - BPHYT_RS01575 0.89 +0.2 359,052 - BPHYT_RS01575 0.89 +1.8 359,159 + +0.5 359,160 - -0.5 359,160 - +0.0 359,160 - -1.0 359,304 + BPHYT_RS01580 0.35 +0.5 359,489 + -0.8 359,539 + -0.9 359,589 + -0.7 359,735 - +0.9 359,835 - BPHYT_RS01585 0.15 +1.6 359,836 + BPHYT_RS01585 0.15 +0.8 359,836 + BPHYT_RS01585 0.15 +1.6 359,837 - BPHYT_RS01585 0.15 +2.3 359,837 - BPHYT_RS01585 0.15 -0.1 359,837 - BPHYT_RS01585 0.15 +1.2 359,837 - BPHYT_RS01585 0.15 +1.0 359,996 - BPHYT_RS01585 0.27 +0.9 360,372 + BPHYT_RS01585 0.54 +0.7 360,373 - BPHYT_RS01585 0.54 +0.7 360,511 + BPHYT_RS01585 0.64 +0.1 360,711 + BPHYT_RS01585 0.78 +1.6 360,712 - BPHYT_RS01585 0.78 +1.4 360,712 - BPHYT_RS01585 0.78 +1.2 360,803 - BPHYT_RS01585 0.84 +1.1 360,987 - +0.5 361,023 + +2.0 361,024 - -0.1 361,024 - +0.3 361,066 + -0.9 361,067 - -0.5 361,067 - -0.4 361,067 - +0.6 361,067 - -0.6 361,185 - BPHYT_RS01590 0.25 -0.6 361,185 - BPHYT_RS01590 0.25 -0.2 361,209 + BPHYT_RS01590 0.29 -0.9 361,209 + BPHYT_RS01590 0.29 +0.3 361,210 - BPHYT_RS01590 0.29 +0.1 361,621 - -0.2 361,663 - -2.2 361,663 - +0.1 361,663 - -0.8 361,674 - -0.2 361,694 + -0.4 361,751 + +0.0 361,752 - -0.3 361,752 - -0.3 361,757 - BPHYT_RS01595 0.10 -1.2 361,847 + BPHYT_RS01595 0.18 +0.4 361,847 + BPHYT_RS01595 0.18 -0.6 361,940 + BPHYT_RS01595 0.26 -0.1 361,941 - BPHYT_RS01595 0.26 -1.0 361,941 - BPHYT_RS01595 0.26 -0.3 361,958 + BPHYT_RS01595 0.28 -0.9 361,982 + BPHYT_RS01595 0.30 -0.9 361,991 + BPHYT_RS01595 0.31 -0.1 361,992 - BPHYT_RS01595 0.31 -2.8 361,992 - BPHYT_RS01595 0.31 -1.5
Or see this region's nucleotide sequence