Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00950 and BPHYT_RS00955 are separated by 12 nucleotides BPHYT_RS00955 and BPHYT_RS00960 are separated by 37 nucleotides
BPHYT_RS00950: BPHYT_RS00950 - DNA polymerase, at 216,867 to 220,016
_RS00950
BPHYT_RS00955: BPHYT_RS00955 - DNA polymerase, at 220,029 to 221,378
_RS00955
BPHYT_RS00960: BPHYT_RS00960 - recombinase RecA, at 221,416 to 222,114
_RS00960
Position (kb) 220
221
222 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 219.048 kb on + strand, within BPHYT_RS00950 at 219.049 kb on - strand, within BPHYT_RS00950 at 219.118 kb on + strand, within BPHYT_RS00950 at 219.118 kb on + strand, within BPHYT_RS00950 at 219.118 kb on + strand, within BPHYT_RS00950 at 219.118 kb on + strand, within BPHYT_RS00950 at 219.118 kb on + strand, within BPHYT_RS00950 at 219.119 kb on - strand, within BPHYT_RS00950 at 219.137 kb on - strand, within BPHYT_RS00950 at 219.149 kb on + strand, within BPHYT_RS00950 at 219.150 kb on - strand, within BPHYT_RS00950 at 219.209 kb on + strand, within BPHYT_RS00950 at 219.238 kb on + strand, within BPHYT_RS00950 at 219.339 kb on - strand, within BPHYT_RS00950 at 219.339 kb on - strand, within BPHYT_RS00950 at 219.378 kb on - strand, within BPHYT_RS00950 at 219.796 kb on + strand at 220.132 kb on + strand at 220.132 kb on + strand at 220.133 kb on - strand at 220.133 kb on - strand at 220.135 kb on + strand at 220.135 kb on + strand at 220.608 kb on + strand, within BPHYT_RS00955 at 220.719 kb on + strand, within BPHYT_RS00955 at 220.719 kb on + strand, within BPHYT_RS00955 at 220.819 kb on + strand, within BPHYT_RS00955 at 220.819 kb on + strand, within BPHYT_RS00955 at 220.819 kb on + strand at 221.261 kb on + strand at 221.261 kb on + strand at 221.261 kb on + strand at 221.261 kb on + strand at 221.291 kb on - strand at 221.291 kb on - strand at 221.316 kb on - strand at 221.698 kb on + strand, within BPHYT_RS00960 at 221.699 kb on - strand, within BPHYT_RS00960 at 221.699 kb on - strand, within BPHYT_RS00960 at 221.869 kb on - strand, within BPHYT_RS00960 at 222.110 kb on + strand at 222.110 kb on + strand at 222.111 kb on - strand at 222.111 kb on - strand at 222.114 kb on + strand at 222.114 kb on + strand at 222.114 kb on + strand at 222.114 kb on + strand at 222.114 kb on + strand at 222.114 kb on + strand at 222.115 kb on - strand at 222.115 kb on - strand at 222.115 kb on - strand at 222.167 kb on - strand at 222.305 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 219,048 + BPHYT_RS00950 0.69 -0.2 219,049 - BPHYT_RS00950 0.69 +0.2 219,118 + BPHYT_RS00950 0.71 +2.0 219,118 + BPHYT_RS00950 0.71 -0.1 219,118 + BPHYT_RS00950 0.71 -0.5 219,118 + BPHYT_RS00950 0.71 -0.2 219,118 + BPHYT_RS00950 0.71 +0.3 219,119 - BPHYT_RS00950 0.71 -0.2 219,137 - BPHYT_RS00950 0.72 +0.7 219,149 + BPHYT_RS00950 0.72 -0.7 219,150 - BPHYT_RS00950 0.72 +1.0 219,209 + BPHYT_RS00950 0.74 +0.4 219,238 + BPHYT_RS00950 0.75 -0.6 219,339 - BPHYT_RS00950 0.78 +1.9 219,339 - BPHYT_RS00950 0.78 +2.6 219,378 - BPHYT_RS00950 0.80 +0.3 219,796 + +0.2 220,132 + +0.0 220,132 + +0.0 220,133 - -2.6 220,133 - +0.5 220,135 + +1.5 220,135 + -0.7 220,608 + BPHYT_RS00955 0.43 -0.7 220,719 + BPHYT_RS00955 0.51 -0.9 220,719 + BPHYT_RS00955 0.51 +0.5 220,819 + BPHYT_RS00955 0.59 -1.3 220,819 + BPHYT_RS00955 0.59 -1.1 220,819 + -0.9 221,261 + -0.2 221,261 + +0.6 221,261 + -0.2 221,261 + +0.0 221,291 - +0.7 221,291 - +0.9 221,316 - +0.6 221,698 + BPHYT_RS00960 0.40 -1.3 221,699 - BPHYT_RS00960 0.40 +0.1 221,699 - BPHYT_RS00960 0.40 -0.1 221,869 - BPHYT_RS00960 0.65 +3.1 222,110 + -0.2 222,110 + +0.2 222,111 - +0.6 222,111 - -0.6 222,114 + +0.1 222,114 + -0.3 222,114 + +0.2 222,114 + +0.6 222,114 + -0.2 222,114 + +0.2 222,115 - -2.1 222,115 - -0.4 222,115 - +0.4 222,167 - -0.4 222,305 - -1.3
Or see this region's nucleotide sequence