Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS00100

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS00095 and BPHYT_RS00100 are separated by 280 nucleotidesBPHYT_RS00100 and BPHYT_RS00105 are separated by 43 nucleotides BPHYT_RS00095: BPHYT_RS00095 - AraC family transcriptional regulator, at 28,838 to 29,704 _RS00095 BPHYT_RS00100: BPHYT_RS00100 - ethanolamine permease, at 29,985 to 31,388 _RS00100 BPHYT_RS00105: BPHYT_RS00105 - ethanolamine ammonia lyase large subunit, at 31,432 to 32,826 _RS00105 Position (kb) 29 30 31 32Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 28.997 kb on - strand, within BPHYT_RS00095at 28.998 kb on + strand, within BPHYT_RS00095at 28.998 kb on + strand, within BPHYT_RS00095at 28.999 kb on - strand, within BPHYT_RS00095at 29.245 kb on + strand, within BPHYT_RS00095at 29.247 kb on + strand, within BPHYT_RS00095at 29.247 kb on + strand, within BPHYT_RS00095at 29.247 kb on + strand, within BPHYT_RS00095at 29.248 kb on - strand, within BPHYT_RS00095at 29.248 kb on - strand, within BPHYT_RS00095at 29.248 kb on - strand, within BPHYT_RS00095at 29.248 kb on - strand, within BPHYT_RS00095at 29.280 kb on - strand, within BPHYT_RS00095at 29.376 kb on + strand, within BPHYT_RS00095at 29.527 kb on + strand, within BPHYT_RS00095at 29.559 kb on + strand, within BPHYT_RS00095at 29.559 kb on + strand, within BPHYT_RS00095at 29.560 kb on - strand, within BPHYT_RS00095at 29.578 kb on - strand, within BPHYT_RS00095at 29.640 kb on + strandat 29.640 kb on + strandat 29.641 kb on - strandat 29.690 kb on - strandat 29.744 kb on + strandat 29.784 kb on + strandat 29.835 kb on + strandat 30.118 kb on - strandat 30.180 kb on + strand, within BPHYT_RS00100at 30.181 kb on - strand, within BPHYT_RS00100at 30.181 kb on - strand, within BPHYT_RS00100at 30.182 kb on + strand, within BPHYT_RS00100at 30.221 kb on + strand, within BPHYT_RS00100at 30.409 kb on - strand, within BPHYT_RS00100at 30.826 kb on - strand, within BPHYT_RS00100at 30.857 kb on + strand, within BPHYT_RS00100at 30.857 kb on + strand, within BPHYT_RS00100at 30.858 kb on - strand, within BPHYT_RS00100at 31.047 kb on + strand, within BPHYT_RS00100at 31.131 kb on + strand, within BPHYT_RS00100at 31.132 kb on - strand, within BPHYT_RS00100at 31.132 kb on - strand, within BPHYT_RS00100at 31.133 kb on + strand, within BPHYT_RS00100at 31.134 kb on - strand, within BPHYT_RS00100at 31.439 kb on - strandat 31.768 kb on - strand, within BPHYT_RS00105at 31.979 kb on - strand, within BPHYT_RS00105at 32.236 kb on + strand, within BPHYT_RS00105at 32.237 kb on - strand, within BPHYT_RS00105at 32.287 kb on + strand, within BPHYT_RS00105at 32.288 kb on - strand, within BPHYT_RS00105at 32.288 kb on - strand, within BPHYT_RS00105at 32.360 kb on + strand, within BPHYT_RS00105at 32.361 kb on - strand, within BPHYT_RS00105at 32.368 kb on + strand, within BPHYT_RS00105

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
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28,997 - BPHYT_RS00095 0.18 -0.7
28,998 + BPHYT_RS00095 0.18 +3.9
28,998 + BPHYT_RS00095 0.18 +0.1
28,999 - BPHYT_RS00095 0.19 +1.2
29,245 + BPHYT_RS00095 0.47 +0.8
29,247 + BPHYT_RS00095 0.47 +0.4
29,247 + BPHYT_RS00095 0.47 +0.7
29,247 + BPHYT_RS00095 0.47 +0.0
29,248 - BPHYT_RS00095 0.47 +0.1
29,248 - BPHYT_RS00095 0.47 +0.4
29,248 - BPHYT_RS00095 0.47 -0.1
29,248 - BPHYT_RS00095 0.47 -0.2
29,280 - BPHYT_RS00095 0.51 +1.2
29,376 + BPHYT_RS00095 0.62 -1.0
29,527 + BPHYT_RS00095 0.79 -1.8
29,559 + BPHYT_RS00095 0.83 +1.0
29,559 + BPHYT_RS00095 0.83 +0.3
29,560 - BPHYT_RS00095 0.83 +0.5
29,578 - BPHYT_RS00095 0.85 -0.6
29,640 + +0.1
29,640 + +0.4
29,641 - +0.0
29,690 - +1.1
29,744 + -0.7
29,784 + -0.2
29,835 + +0.5
30,118 - -1.6
30,180 + BPHYT_RS00100 0.14 +1.2
30,181 - BPHYT_RS00100 0.14 -1.3
30,181 - BPHYT_RS00100 0.14 +0.1
30,182 + BPHYT_RS00100 0.14 +0.2
30,221 + BPHYT_RS00100 0.17 -0.4
30,409 - BPHYT_RS00100 0.30 -3.1
30,826 - BPHYT_RS00100 0.60 +1.5
30,857 + BPHYT_RS00100 0.62 -0.4
30,857 + BPHYT_RS00100 0.62 -0.2
30,858 - BPHYT_RS00100 0.62 -3.8
31,047 + BPHYT_RS00100 0.76 +0.7
31,131 + BPHYT_RS00100 0.82 -0.1
31,132 - BPHYT_RS00100 0.82 -0.6
31,132 - BPHYT_RS00100 0.82 +0.2
31,133 + BPHYT_RS00100 0.82 -2.7
31,134 - BPHYT_RS00100 0.82 +0.6
31,439 - -0.8
31,768 - BPHYT_RS00105 0.24 -0.5
31,979 - BPHYT_RS00105 0.39 +0.4
32,236 + BPHYT_RS00105 0.58 -0.7
32,237 - BPHYT_RS00105 0.58 -1.2
32,287 + BPHYT_RS00105 0.61 +0.0
32,288 - BPHYT_RS00105 0.61 +0.0
32,288 - BPHYT_RS00105 0.61 +0.3
32,360 + BPHYT_RS00105 0.67 -0.1
32,361 - BPHYT_RS00105 0.67 -0.7
32,368 + BPHYT_RS00105 0.67 -0.3

Or see this region's nucleotide sequence