Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS21200

Experiment: D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride
4,769,302	+		PFLU_RS21195	0.85	-1.8
4,769,302	+		PFLU_RS21195	0.85	+0.2
4,769,303	-		PFLU_RS21195	0.85	+0.9
4,769,303	-		PFLU_RS21195	0.85	-0.4
4,769,333	-		PFLU_RS21195	0.86	+0.1
4,769,381	+		PFLU_RS21195	0.87	+1.4
4,769,382	-		PFLU_RS21195	0.87	+0.9
4,769,382	-		PFLU_RS21195	0.87	+1.4
4,769,382	-		PFLU_RS21195	0.87	-2.9
4,769,401	+		PFLU_RS21195	0.87	-0.9
4,769,401	+		PFLU_RS21195	0.87	+3.5
4,769,401	+		PFLU_RS21195	0.87	-0.9
4,769,401	+		PFLU_RS21195	0.87	+0.5
4,769,401	+		PFLU_RS21195	0.87	-1.5
4,769,402	-		PFLU_RS21195	0.87	-1.3
4,769,402	-		PFLU_RS21195	0.87	-1.8
4,769,402	-		PFLU_RS21195	0.87	-0.1
4,769,402	-		PFLU_RS21195	0.87	-1.7
4,769,402	-		PFLU_RS21195	0.87	-2.2
4,769,517	-		PFLU_RS21195	0.90	-1.4
4,769,552	+				+0.3
4,769,553	-				-1.7
4,769,579	+				-1.1
4,769,579	+				+0.3
4,769,580	-				-0.3
4,769,580	-				-0.7
4,769,644	+				-2.1
4,769,644	+				-0.7
4,769,644	+				-1.4
4,769,644	+				+0.2
4,769,644	+				+1.5
4,769,645	-				+3.2
4,769,645	-				+1.4
4,769,645	-				-3.1
4,769,645	-				-0.9
4,769,653	+				-1.9
4,769,653	+				-2.2
4,769,653	+				-0.3
4,769,653	+				-1.8
4,769,653	+				-0.8
4,769,654	-				-1.5
4,769,654	-				+0.7
4,769,654	-				+2.2
4,769,654	-				-0.7
4,769,654	-				+1.6
4,769,744	-				-0.5
4,769,833	+				+0.8
4,769,833	+				+0.8
4,769,833	+				-0.4
4,769,833	+				+1.5
4,769,833	+				-0.7
4,769,850	-				-1.5
4,769,850	-				-3.2
4,769,855	+				+0.8
4,769,874	+				-0.2
4,769,874	+				+1.8
4,769,875	-				-2.1
4,769,875	-				+1.4
4,769,885	+				+0.0
4,769,885	+				+1.2
4,769,886	-				-1.2
4,769,893	+				+1.1
4,769,893	+				+0.1
4,769,893	+				+0.3
4,769,893	+				-1.5
4,769,893	+				-1.7
4,769,893	+				-1.7
4,769,893	+				-0.8
4,769,893	+				+1.1
4,769,893	+				-1.2
4,769,893	+				-1.8
4,769,893	+				+1.0
4,769,893	+				-0.5
4,769,893	+				+2.2
4,769,893	+				-0.4
4,769,894	-				+0.2
4,769,894	-				-0.2
4,769,894	-				-0.3
4,769,894	-				+2.1
4,769,894	-				-1.5
4,769,894	-				-0.9
4,769,894	-				-0.0
4,769,894	-				+1.6
4,769,894	-				+1.4
4,769,922	+				+0.3
4,769,922	+				-1.1
4,769,922	+				+0.0
4,769,923	-				-1.2
4,769,923	-				-0.6
4,769,923	-				+1.6
4,769,923	-				-0.5
4,769,923	-				+0.4
4,769,923	-				+0.2
4,769,923	-				-2.4
4,769,923	-				+0.1
4,769,955	+				+1.4
4,769,955	+				-0.7
4,769,955	+				+2.3
4,769,956	-				-0.7
4,769,956	-				+1.5
4,770,020	+				-0.7
4,770,020	+				-1.4
4,770,020	+				-1.1
4,770,020	+				-0.3
4,770,020	+				+0.3
4,770,021	-				-1.3
4,770,021	-				+0.1
4,770,033	+				-0.9
4,770,034	-				-1.6
4,770,057	+				-1.5
4,770,057	+				+0.2
4,770,057	+				+0.0
4,770,057	+				-0.1
4,770,058	-				-1.2
4,770,058	-				-0.9
4,770,076	-				-1.2
4,770,084	+				-0.7
4,770,084	+				-0.2
4,770,085	-				-0.5
4,770,088	+				-0.2
4,770,088	+				-2.1
4,770,088	+				-2.7
4,770,088	+				+0.9
4,770,088	+				-0.9
4,770,088	+				-1.8
4,770,088	+				-0.5
4,770,088	+				+1.1
4,770,088	+				-1.8
4,770,088	+				-0.1
4,770,088	+				-1.4
4,770,089	-				+1.9
4,770,089	-				+1.6
4,770,089	-				-0.9
4,770,089	-				-0.4
4,770,089	-				-1.2
4,770,089	-				+0.5
4,770,089	-				-0.7
4,770,089	-				-1.1
4,770,089	-				+0.4
4,770,089	-				-0.7
4,770,089	-				-1.7
4,770,092	+				+2.4
4,770,092	+				-0.3
4,770,092	+				-2.8
4,770,092	+				+0.5
4,770,092	+				-1.2
4,770,092	+				+0.6
4,770,092	+				-2.7
4,770,092	+				-2.5
4,770,092	+				-1.2
4,770,092	+				-0.3
4,770,092	+				-1.5
4,770,092	+				-0.6
4,770,092	+				-0.4
4,770,092	+				-0.1
4,770,093	-				-1.1
4,770,093	-				+0.8
4,770,093	-				+0.5
4,770,093	-				+1.9
4,770,093	-				-1.0
4,770,093	-				+1.3
4,770,093	-				+0.1
4,770,093	-				-0.9
4,770,093	-				+0.8
4,770,093	-				-2.0
4,770,093	-				-1.3
4,770,093	-				+0.2
4,770,093	-				-2.6
4,770,093	-				+1.1
4,770,093	-				-1.2
4,770,093	-				+1.3
4,770,093	-				+0.9
4,770,093	-				+0.8
4,770,093	-				+1.9
4,770,093	-				-0.5
4,770,093	-				-2.2
4,770,093	-				-0.2
4,770,093	-				-0.1
4,770,093	-				-0.5
4,770,138	+				+0.5
4,770,139	-				-2.6
4,770,141	-				-1.1
4,770,212	+				-0.8
4,770,251	+				-0.3
4,770,252	-				-0.6
4,770,263	-				-0.1
4,770,274	+				+0.3
4,770,274	+				-0.7
4,770,274	+				+2.9
4,770,274	+				-3.2
4,770,275	-				-1.4
4,770,275	-				-0.4
4,770,275	-				-1.1
4,770,275	-				-3.4
4,770,308	+				+0.5
4,770,308	+				+0.6
4,770,309	-				-1.9
4,770,309	-				-1.7
4,770,309	-				-1.5
4,770,309	-				-1.4
4,770,309	-				-0.9
4,770,486	+		PFLU_RS21200	0.13	-1.7
4,770,486	+		PFLU_RS21200	0.13	-2.5
4,770,486	+		PFLU_RS21200	0.13	+0.2
4,770,486	+		PFLU_RS21200	0.13	-1.2
4,770,487	-		PFLU_RS21200	0.13	-0.7
4,770,487	-		PFLU_RS21200	0.13	-1.1
4,770,487	-		PFLU_RS21200	0.13	+1.3
4,770,537	+		PFLU_RS21200	0.16	+0.1
4,770,537	+		PFLU_RS21200	0.16	-1.2
4,770,537	+		PFLU_RS21200	0.16	-0.4
4,770,538	-		PFLU_RS21200	0.16	-2.2
4,770,693	+		PFLU_RS21200	0.25	+0.3
4,770,693	+		PFLU_RS21200	0.25	-2.2
4,770,694	-		PFLU_RS21200	0.25	+0.3
4,770,694	-		PFLU_RS21200	0.25	-1.5
4,770,694	-		PFLU_RS21200	0.25	-1.1
4,770,694	-		PFLU_RS21200	0.25	+0.9
4,770,798	+		PFLU_RS21200	0.31	-0.1
4,770,798	+		PFLU_RS21200	0.31	-2.2
4,770,798	+		PFLU_RS21200	0.31	-1.2
4,770,798	+		PFLU_RS21200	0.31	-2.4
4,770,798	+		PFLU_RS21200	0.31	-0.1
4,770,798	+		PFLU_RS21200	0.31	-2.1
4,770,799	-		PFLU_RS21200	0.31	-0.3
4,770,799	-		PFLU_RS21200	0.31	-0.7
4,770,799	-		PFLU_RS21200	0.31	+0.1
4,770,833	+		PFLU_RS21200	0.33	-0.9
4,770,833	+		PFLU_RS21200	0.33	+0.9
4,770,833	+		PFLU_RS21200	0.33	-1.4
4,770,834	-		PFLU_RS21200	0.33	+0.1
4,770,931	-		PFLU_RS21200	0.38	+0.9
4,771,174	-		PFLU_RS21200	0.52	-1.6
4,771,198	-		PFLU_RS21200	0.53	-1.8
4,771,311	+		PFLU_RS21200	0.60	-0.1
4,771,311	+		PFLU_RS21200	0.60	-2.2
4,771,312	-		PFLU_RS21200	0.60	-0.9
4,771,312	-		PFLU_RS21200	0.60	-0.2
4,771,312	-		PFLU_RS21200	0.60	-1.3
4,771,429	-		PFLU_RS21200	0.66	-0.1
4,771,429	-		PFLU_RS21200	0.66	-1.5
4,771,464	+		PFLU_RS21200	0.68	-1.8
4,771,464	+		PFLU_RS21200	0.68	-1.7
4,771,464	+		PFLU_RS21200	0.68	-2.2
4,771,464	+		PFLU_RS21200	0.68	-0.1
4,771,464	+		PFLU_RS21200	0.68	-2.8
4,771,464	+		PFLU_RS21200	0.68	-2.3
4,771,465	-		PFLU_RS21200	0.68	-0.5
4,771,465	-		PFLU_RS21200	0.68	+0.3
4,771,473	+		PFLU_RS21200	0.69	-0.2
4,771,473	+		PFLU_RS21200	0.69	-3.3
4,771,473	+		PFLU_RS21200	0.69	-2.2
4,771,473	+		PFLU_RS21200	0.69	-0.4
4,771,474	-		PFLU_RS21200	0.69	-2.2
4,771,474	-		PFLU_RS21200	0.69	-2.2
4,771,474	-		PFLU_RS21200	0.69	+0.3
4,771,474	-		PFLU_RS21200	0.69	-2.1
4,771,474	-		PFLU_RS21200	0.69	-0.4
4,771,809	+		PFLU_RS21200	0.88	-1.4
4,771,809	+		PFLU_RS21200	0.88	-2.8
4,771,809	+		PFLU_RS21200	0.88	+0.3
4,771,809	+		PFLU_RS21200	0.88	-3.2
4,771,809	+		PFLU_RS21200	0.88	-1.1
4,771,810	-		PFLU_RS21200	0.88	-0.1
4,771,810	-		PFLU_RS21200	0.88	-2.1
4,771,810	-		PFLU_RS21200	0.88	-0.8
4,771,810	-		PFLU_RS21200	0.88	-1.2
4,772,026	+				-0.1
4,772,049	+				-0.6
4,772,050	-				-1.4
4,772,085	+				-2.0
4,772,085	+				-0.2
4,772,085	+				-0.2
4,772,085	+				+0.9
4,772,085	+				+0.3
4,772,085	+				+0.4
4,772,085	+				+0.7
4,772,085	+				-1.0
4,772,086	-				-3.1
4,772,086	-				+2.2
4,772,086	-				-1.1
4,772,086	-				+0.3
4,772,086	-				-0.8
4,772,086	-				-2.2
4,772,086	-				-3.0
4,772,086	-				-1.3
4,772,256	+		PFLU_RS21205	0.13	-0.8
4,772,256	+		PFLU_RS21205	0.13	-0.9
4,772,256	+		PFLU_RS21205	0.13	-2.1
4,772,256	+		PFLU_RS21205	0.13	-1.0
4,772,256	+		PFLU_RS21205	0.13	-0.1
4,772,256	+		PFLU_RS21205	0.13	-0.5
4,772,256	+		PFLU_RS21205	0.13	-3.0
4,772,256	+		PFLU_RS21205	0.13	-1.5
4,772,256	+		PFLU_RS21205	0.13	-0.4
4,772,256	+		PFLU_RS21205	0.13	-2.2
4,772,256	+		PFLU_RS21205	0.13	-1.4
4,772,256	+		PFLU_RS21205	0.13	-1.5
4,772,256	+		PFLU_RS21205	0.13	-1.0
4,772,256	+		PFLU_RS21205	0.13	+0.0
4,772,256	+		PFLU_RS21205	0.13	-1.7
4,772,256	+		PFLU_RS21205	0.13	-1.2
4,772,257	-		PFLU_RS21205	0.13	-0.9
4,772,257	-		PFLU_RS21205	0.13	-1.7
4,772,257	-		PFLU_RS21205	0.13	-0.8
4,772,257	-		PFLU_RS21205	0.13	+0.3
4,772,257	-		PFLU_RS21205	0.13	+0.5
4,772,257	-		PFLU_RS21205	0.13	-2.6
4,772,257	-		PFLU_RS21205	0.13	-2.7
4,772,257	-		PFLU_RS21205	0.13	-0.6
4,772,257	-		PFLU_RS21205	0.13	+1.2
4,772,257	-		PFLU_RS21205	0.13	-1.5
4,772,257	-		PFLU_RS21205	0.13	-0.1
4,772,257	-		PFLU_RS21205	0.13	+0.0
4,772,257	-		PFLU_RS21205	0.13	-1.0
4,772,257	-		PFLU_RS21205	0.13	-2.0
4,772,257	-		PFLU_RS21205	0.13	-0.5
4,772,257	-		PFLU_RS21205	0.13	-0.1
4,772,257	-		PFLU_RS21205	0.13	-1.4
4,772,257	-		PFLU_RS21205	0.13	-0.7
4,772,257	-		PFLU_RS21205	0.13	-2.2
4,772,257	-		PFLU_RS21205	0.13	-1.1
4,772,365	+		PFLU_RS21205	0.19	-1.4
4,772,430	+		PFLU_RS21205	0.23	-1.2
4,772,430	+		PFLU_RS21205	0.23	-1.2
4,772,430	+		PFLU_RS21205	0.23	-2.6
4,772,431	-		PFLU_RS21205	0.23	-0.7
4,772,471	+		PFLU_RS21205	0.26	-1.0
4,772,472	-		PFLU_RS21205	0.26	-0.9
4,772,500	-		PFLU_RS21205	0.27	-0.7
4,772,698	-		PFLU_RS21205	0.39	-0.4
4,772,698	-		PFLU_RS21205	0.39	-2.3
4,772,792	+		PFLU_RS21205	0.44	-2.5
4,772,792	+		PFLU_RS21205	0.44	-0.6
4,772,793	-		PFLU_RS21205	0.44	+1.4
4,772,793	-		PFLU_RS21205	0.44	+0.5
4,772,846	+		PFLU_RS21205	0.47	-1.4
4,772,853	+		PFLU_RS21205	0.48	-1.1
4,772,853	+		PFLU_RS21205	0.48	-0.4
4,772,853	+		PFLU_RS21205	0.48	-0.5
4,772,853	+		PFLU_RS21205	0.48	-1.2
4,772,854	-		PFLU_RS21205	0.48	-1.5
4,772,926	+		PFLU_RS21205	0.52	-1.5
4,772,926	+		PFLU_RS21205	0.52	-0.8
4,772,926	+		PFLU_RS21205	0.52	+0.9
4,772,926	+		PFLU_RS21205	0.52	-0.3
4,772,927	-		PFLU_RS21205	0.52	-1.3
4,772,927	-		PFLU_RS21205	0.52	+1.2