Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS21030

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS21030 and BPHYT_RS21035 are separated by 63 nucleotides BPHYT_RS21030: BPHYT_RS21030 - ABC transporter ATP-binding protein, at 277,858 to 279,399 _RS21030 BPHYT_RS21035: BPHYT_RS21035 - ABC transporter permease, at 279,463 to 280,617 _RS21035 Position (kb) 277 278 279 280Strain fitness (log2 ratio) -2 -1 0 1 2at 277.275 kb on + strandat 277.567 kb on + strandat 277.989 kb on + strandat 278.018 kb on - strand, within BPHYT_RS21030at 278.140 kb on - strand, within BPHYT_RS21030at 278.319 kb on - strand, within BPHYT_RS21030at 279.098 kb on + strand, within BPHYT_RS21030at 279.424 kb on - strandat 279.520 kb on - strandat 279.723 kb on - strand, within BPHYT_RS21035at 280.018 kb on - strand, within BPHYT_RS21035at 280.018 kb on - strand, within BPHYT_RS21035at 280.219 kb on + strand, within BPHYT_RS21035

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB
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277,275 + +0.9
277,567 + +0.2
277,989 + +1.0
278,018 - BPHYT_RS21030 0.10 +1.8
278,140 - BPHYT_RS21030 0.18 +0.4
278,319 - BPHYT_RS21030 0.30 +0.4
279,098 + BPHYT_RS21030 0.80 +1.6
279,424 - -0.6
279,520 - +0.4
279,723 - BPHYT_RS21035 0.23 -0.9
280,018 - BPHYT_RS21035 0.48 +0.9
280,018 - BPHYT_RS21035 0.48 -2.1
280,219 + BPHYT_RS21035 0.65 -1.1

Or see this region's nucleotide sequence