Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20080

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS20075 and BPHYT_RS20080 are separated by 510 nucleotidesBPHYT_RS20080 and BPHYT_RS20085 are separated by 16 nucleotidesBPHYT_RS20085 and BPHYT_RS20090 are separated by 40 nucleotides BPHYT_RS20075: BPHYT_RS20075 - hypothetical protein, at 47,455 to 47,667 _RS20075 BPHYT_RS20080: BPHYT_RS20080 - ABC transporter permease, at 48,178 to 49,041 _RS20080 BPHYT_RS20085: BPHYT_RS20085 - mannosyltransferase, at 49,058 to 49,852 _RS20085 BPHYT_RS20090: BPHYT_RS20090 - nitrate ABC transporter substrate-binding protein, at 49,893 to 50,912 _RS20090 Position (kb) 48 49 50Strain fitness (log2 ratio) -1 0 1at 47.473 kb on + strandat 48.157 kb on + strandat 49.041 kb on + strandat 49.042 kb on - strandat 49.519 kb on - strand, within BPHYT_RS20085at 49.666 kb on + strand, within BPHYT_RS20085at 49.894 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB
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47,473 + -0.5
48,157 + -1.1
49,041 + -0.3
49,042 - -0.2
49,519 - BPHYT_RS20085 0.58 -0.5
49,666 + BPHYT_RS20085 0.76 +0.6
49,894 + +0.5

Or see this region's nucleotide sequence