Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20060 and BPHYT_RS20065 overlap by 1 nucleotides BPHYT_RS20065 and BPHYT_RS20070 are separated by 81 nucleotides BPHYT_RS20070 and BPHYT_RS20075 are separated by 335 nucleotides
BPHYT_RS20060: BPHYT_RS20060 - hypothetical protein, at 44,430 to 45,122
_RS20060
BPHYT_RS20065: BPHYT_RS20065 - hypothetical protein, at 45,122 to 45,604
_RS20065
BPHYT_RS20070: BPHYT_RS20070 - hypothetical protein, at 45,686 to 47,119
_RS20070
BPHYT_RS20075: BPHYT_RS20075 - hypothetical protein, at 47,455 to 47,667
_RS20075
Position (kb) 45
46
47
48 Strain fitness (log2 ratio) -2
-1
0
1
2 at 45.145 kb on + strand at 45.418 kb on - strand, within BPHYT_RS20065 at 45.630 kb on + strand at 45.631 kb on - strand at 45.646 kb on - strand at 45.661 kb on - strand at 46.098 kb on - strand, within BPHYT_RS20070 at 46.883 kb on + strand at 47.148 kb on + strand at 47.473 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB remove 45,145 + +1.5 45,418 - BPHYT_RS20065 0.61 +0.3 45,630 + -0.2 45,631 - -0.0 45,646 - -0.7 45,661 - +2.1 46,098 - BPHYT_RS20070 0.29 +2.3 46,883 + +0.0 47,148 + -2.1 47,473 + -0.5
Or see this region's nucleotide sequence