Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS05030 and BPHYT_RS05035 overlap by 11 nucleotides BPHYT_RS05035 and BPHYT_RS05040 are separated by 100 nucleotides BPHYT_RS05040 and BPHYT_RS05045 are separated by 81 nucleotides
BPHYT_RS05030: BPHYT_RS05030 - sugar ABC transporter permease, at 1,159,872 to 1,160,810
_RS05030
BPHYT_RS05035: BPHYT_RS05035 - sugar ABC transporter permease, at 1,160,800 to 1,161,657
_RS05035
BPHYT_RS05040: BPHYT_RS05040 - sugar ABC transporter ATPase, at 1,161,758 to 1,162,873
_RS05040
BPHYT_RS05045: BPHYT_RS05045 - transcriptional regulator, at 1,162,955 to 1,163,872
_RS05045
Position (kb) 1161
1162
1163 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1160.775 kb on + strand at 1160.776 kb on - strand at 1160.808 kb on + strand at 1160.808 kb on + strand at 1160.809 kb on - strand at 1160.836 kb on + strand at 1160.837 kb on - strand at 1160.837 kb on - strand at 1160.837 kb on - strand at 1160.881 kb on + strand at 1160.881 kb on + strand at 1161.019 kb on - strand, within BPHYT_RS05035 at 1161.100 kb on + strand, within BPHYT_RS05035 at 1161.265 kb on + strand, within BPHYT_RS05035 at 1161.265 kb on + strand, within BPHYT_RS05035 at 1161.266 kb on - strand at 1161.304 kb on + strand, within BPHYT_RS05035 at 1161.304 kb on + strand, within BPHYT_RS05035 at 1161.305 kb on - strand, within BPHYT_RS05035 at 1161.598 kb on + strand at 1161.598 kb on + strand at 1161.598 kb on + strand at 1161.599 kb on - strand at 1161.599 kb on - strand at 1161.795 kb on - strand at 1161.901 kb on + strand, within BPHYT_RS05040 at 1162.010 kb on + strand, within BPHYT_RS05040 at 1162.011 kb on - strand, within BPHYT_RS05040 at 1162.019 kb on + strand, within BPHYT_RS05040 at 1162.268 kb on - strand, within BPHYT_RS05040 at 1162.822 kb on + strand at 1162.823 kb on - strand at 1162.823 kb on - strand at 1162.893 kb on + strand at 1163.055 kb on + strand, within BPHYT_RS05045 at 1163.216 kb on + strand, within BPHYT_RS05045 at 1163.298 kb on + strand, within BPHYT_RS05045 at 1163.299 kb on - strand, within BPHYT_RS05045 at 1163.581 kb on + strand, within BPHYT_RS05045 at 1163.676 kb on + strand, within BPHYT_RS05045 at 1163.676 kb on + strand, within BPHYT_RS05045 at 1163.676 kb on + strand, within BPHYT_RS05045 at 1163.767 kb on + strand, within BPHYT_RS05045 at 1163.846 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB remove 1,160,775 + -0.1 1,160,776 - -2.0 1,160,808 + -1.1 1,160,808 + -0.9 1,160,809 - -2.8 1,160,836 + -0.6 1,160,837 - +0.0 1,160,837 - -0.7 1,160,837 - -0.3 1,160,881 + -0.5 1,160,881 + +0.2 1,161,019 - BPHYT_RS05035 0.26 -1.7 1,161,100 + BPHYT_RS05035 0.35 -2.0 1,161,265 + BPHYT_RS05035 0.54 +1.9 1,161,265 + BPHYT_RS05035 0.54 -2.9 1,161,266 - -1.3 1,161,304 + BPHYT_RS05035 0.59 +2.0 1,161,304 + BPHYT_RS05035 0.59 +0.0 1,161,305 - BPHYT_RS05035 0.59 -0.4 1,161,598 + -0.2 1,161,598 + -0.4 1,161,598 + -0.9 1,161,599 - -1.5 1,161,599 - -0.9 1,161,795 - -0.2 1,161,901 + BPHYT_RS05040 0.13 -1.8 1,162,010 + BPHYT_RS05040 0.23 -0.0 1,162,011 - BPHYT_RS05040 0.23 -3.1 1,162,019 + BPHYT_RS05040 0.23 -2.0 1,162,268 - BPHYT_RS05040 0.46 -1.5 1,162,822 + +0.2 1,162,823 - +2.5 1,162,823 - +3.1 1,162,893 + -1.9 1,163,055 + BPHYT_RS05045 0.11 +0.0 1,163,216 + BPHYT_RS05045 0.28 +0.6 1,163,298 + BPHYT_RS05045 0.37 +0.5 1,163,299 - BPHYT_RS05045 0.37 +1.0 1,163,581 + BPHYT_RS05045 0.68 +1.2 1,163,676 + BPHYT_RS05045 0.79 -0.8 1,163,676 + BPHYT_RS05045 0.79 -0.4 1,163,676 + BPHYT_RS05045 0.79 -1.6 1,163,767 + BPHYT_RS05045 0.88 -0.2 1,163,846 + -2.9
Or see this region's nucleotide sequence