Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS14930

Experiment: D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride
3,339,483	-		PFLU_RS14925	0.34	-0.9
3,339,499	+		PFLU_RS14925	0.36	-1.2
3,339,499	+		PFLU_RS14925	0.36	+0.2
3,339,499	+		PFLU_RS14925	0.36	+0.0
3,339,500	-		PFLU_RS14925	0.36	+2.3
3,339,534	+		PFLU_RS14925	0.39	-1.0
3,339,568	-		PFLU_RS14925	0.41	+0.3
3,339,568	-		PFLU_RS14925	0.41	-2.3
3,339,582	-		PFLU_RS14925	0.42	-1.0
3,339,582	-		PFLU_RS14925	0.42	-1.9
3,339,628	+		PFLU_RS14925	0.46	-0.4
3,339,659	-		PFLU_RS14925	0.48	-1.7
3,339,659	-		PFLU_RS14925	0.48	-0.1
3,339,673	+		PFLU_RS14925	0.50	+1.1
3,339,673	+		PFLU_RS14925	0.50	-2.4
3,339,673	+		PFLU_RS14925	0.50	-1.6
3,339,692	+		PFLU_RS14925	0.51	-0.7
3,339,692	+		PFLU_RS14925	0.51	+0.0
3,339,693	-		PFLU_RS14925	0.51	-1.2
3,339,764	-		PFLU_RS14925	0.57	+0.3
3,339,820	+		PFLU_RS14925	0.61	+1.6
3,339,820	+		PFLU_RS14925	0.61	-2.6
3,339,820	+		PFLU_RS14925	0.61	-2.5
3,339,820	+		PFLU_RS14925	0.61	+0.6
3,339,820	+		PFLU_RS14925	0.61	+0.6
3,339,821	-		PFLU_RS14925	0.61	-2.0
3,339,834	+		PFLU_RS14925	0.62	-1.2
3,339,850	+		PFLU_RS14925	0.64	+0.1
3,339,850	+		PFLU_RS14925	0.64	+0.9
3,339,851	-		PFLU_RS14925	0.64	+2.3
3,339,851	-		PFLU_RS14925	0.64	+0.6
3,339,886	+		PFLU_RS14925	0.67	-1.2
3,339,887	-		PFLU_RS14925	0.67	+1.6
3,339,887	-		PFLU_RS14925	0.67	-0.1
3,339,932	+		PFLU_RS14925	0.70	+0.6
3,339,933	-		PFLU_RS14925	0.70	+2.4
3,339,933	-		PFLU_RS14925	0.70	-0.4
3,339,978	+		PFLU_RS14925	0.74	+1.6
3,340,068	-		PFLU_RS14925	0.81	+1.6
3,340,183	+				-0.7
3,340,183	+				+1.6
3,340,184	-				+0.5
3,340,184	-				-0.7
3,340,194	+				+1.3
3,340,224	-				-1.2
3,340,224	-				+0.1
3,340,326	+				-0.4
3,340,326	+				+0.6
3,340,330	+				+0.0
3,340,433	+				-0.3
3,340,636	+		PFLU_RS14930	0.18	-0.7
3,340,637	-		PFLU_RS14930	0.18	-2.6
3,340,637	-		PFLU_RS14930	0.18	-1.4
3,340,640	+		PFLU_RS14930	0.19	+0.1
3,340,640	+		PFLU_RS14930	0.19	-1.4
3,340,640	+		PFLU_RS14930	0.19	-0.9
3,340,640	+		PFLU_RS14930	0.19	-1.7
3,340,640	+		PFLU_RS14930	0.19	+0.0
3,340,640	+		PFLU_RS14930	0.19	+1.0
3,340,640	+		PFLU_RS14930	0.19	-2.0
3,340,640	+		PFLU_RS14930	0.19	+1.2
3,340,641	-		PFLU_RS14930	0.19	-0.6
3,340,641	-		PFLU_RS14930	0.19	+2.3
3,340,641	-		PFLU_RS14930	0.19	+0.9
3,340,641	-		PFLU_RS14930	0.19	+0.0
3,340,641	-		PFLU_RS14930	0.19	+0.0
3,340,641	-		PFLU_RS14930	0.19	-0.7
3,340,641	-		PFLU_RS14930	0.19	-2.1
3,340,653	+		PFLU_RS14930	0.20	-1.3
3,340,653	+		PFLU_RS14930	0.20	+0.6
3,340,654	-		PFLU_RS14930	0.20	-1.6
3,340,654	-		PFLU_RS14930	0.20	+2.8
3,340,654	-		PFLU_RS14930	0.20	-1.2
3,340,654	-		PFLU_RS14930	0.20	-0.7
3,340,656	+		PFLU_RS14930	0.20	+1.6
3,340,656	+		PFLU_RS14930	0.20	+1.8
3,340,656	+		PFLU_RS14930	0.20	+0.0
3,340,657	-		PFLU_RS14930	0.20	+0.8
3,340,657	-		PFLU_RS14930	0.20	+1.6
3,340,657	-		PFLU_RS14930	0.20	+0.6
3,340,657	-		PFLU_RS14930	0.20	+1.6
3,340,657	-		PFLU_RS14930	0.20	+2.6
3,340,657	-		PFLU_RS14930	0.20	-1.7
3,340,657	-		PFLU_RS14930	0.20	+2.2
3,340,657	-		PFLU_RS14930	0.20	-1.6
3,340,657	-		PFLU_RS14930	0.20	+0.1
3,340,657	-		PFLU_RS14930	0.20	+1.6
3,340,657	-		PFLU_RS14930	0.20	-1.0
3,340,657	-		PFLU_RS14930	0.20	+0.6
3,340,706	+		PFLU_RS14930	0.24	+3.9
3,340,707	-		PFLU_RS14930	0.24	+0.2
3,340,707	-		PFLU_RS14930	0.24	-1.0
3,340,709	+		PFLU_RS14930	0.24	-2.9
3,340,710	-		PFLU_RS14930	0.24	+1.2
3,340,893	+		PFLU_RS14930	0.38	-1.6
3,340,894	-		PFLU_RS14930	0.38	+1.6
3,341,002	-		PFLU_RS14930	0.46	-1.2
3,341,002	-		PFLU_RS14930	0.46	-0.4
3,341,002	-		PFLU_RS14930	0.46	+2.3
3,341,052	+		PFLU_RS14930	0.50	+0.0
3,341,052	+		PFLU_RS14930	0.50	+0.0
3,341,052	+		PFLU_RS14930	0.50	+0.0
3,341,053	-		PFLU_RS14930	0.50	-1.2
3,341,053	-		PFLU_RS14930	0.50	+1.1
3,341,098	+		PFLU_RS14930	0.54	-0.7
3,341,257	+		PFLU_RS14930	0.66	-1.4
3,341,258	-		PFLU_RS14930	0.66	-3.2
3,341,316	+		PFLU_RS14930	0.70	-1.4
3,341,316	+		PFLU_RS14930	0.70	+0.4
3,341,316	+		PFLU_RS14930	0.70	-2.3
3,341,317	-		PFLU_RS14930	0.70	+0.0
3,341,349	+		PFLU_RS14930	0.73	+1.4
3,341,349	+		PFLU_RS14930	0.73	+1.2
3,341,349	+		PFLU_RS14930	0.73	+1.9
3,341,349	+		PFLU_RS14930	0.73	-2.6
3,341,349	+		PFLU_RS14930	0.73	-0.6
3,341,349	+		PFLU_RS14930	0.73	-2.2
3,341,349	+		PFLU_RS14930	0.73	-1.9
3,341,349	+		PFLU_RS14930	0.73	-1.0
3,341,350	-		PFLU_RS14930	0.73	-0.4
3,341,350	-		PFLU_RS14930	0.73	-1.4
3,341,350	-		PFLU_RS14930	0.73	+4.8
3,341,350	-		PFLU_RS14930	0.73	-0.7
3,341,350	-		PFLU_RS14930	0.73	-1.0
3,341,350	-		PFLU_RS14930	0.73	+0.5
3,341,350	-		PFLU_RS14930	0.73	-1.0
3,341,433	-		PFLU_RS14930	0.79	-0.7
3,341,440	+		PFLU_RS14930	0.80	-0.7
3,341,651	+				+0.1
3,341,652	-				-1.0
3,341,658	+				-1.0
3,341,701	+				+0.3
3,341,701	+				+1.2
3,341,701	+				-1.4
3,341,701	+				-1.0
3,341,702	-				-0.7
3,341,702	-				-0.4
3,341,702	-				-0.4
3,341,702	-				-1.3
3,341,702	-				-0.6
3,341,702	-				-0.1
3,341,721	+				+0.6
3,341,721	+				+0.0
3,341,727	+				-1.3
3,341,803	+				+0.7
3,341,803	+				+0.4
3,341,811	+				+1.0
3,341,812	-				-1.6
3,342,231	+		PFLU_RS14935	0.30	+0.0
3,342,231	+		PFLU_RS14935	0.30	-1.2
3,342,231	+		PFLU_RS14935	0.30	+1.6
3,342,231	+		PFLU_RS14935	0.30	+0.0
3,342,232	-		PFLU_RS14935	0.30	+0.6
3,342,232	-		PFLU_RS14935	0.30	-1.0
3,342,232	-		PFLU_RS14935	0.30	+0.9
3,342,241	+		PFLU_RS14935	0.31	-2.3
3,342,261	+		PFLU_RS14935	0.33	+0.3
3,342,275	+		PFLU_RS14935	0.34	+0.3
3,342,275	+		PFLU_RS14935	0.34	-0.7
3,342,474	+		PFLU_RS14935	0.48	-1.9
3,342,474	+		PFLU_RS14935	0.48	-1.7
3,342,474	+		PFLU_RS14935	0.48	+1.6
3,342,474	+		PFLU_RS14935	0.48	+1.6
3,342,474	+		PFLU_RS14935	0.48	+3.2
3,342,474	+		PFLU_RS14935	0.48	-2.1
3,342,474	+		PFLU_RS14935	0.48	-1.4
3,342,475	-		PFLU_RS14935	0.49	-2.2
3,342,475	-		PFLU_RS14935	0.49	-1.2
3,342,475	-		PFLU_RS14935	0.49	+0.5
3,342,514	+		PFLU_RS14935	0.52	-1.2
3,342,515	-		PFLU_RS14935	0.52	+3.4
3,342,517	+		PFLU_RS14935	0.52	-1.6
3,342,517	+		PFLU_RS14935	0.52	-0.7
3,342,517	+		PFLU_RS14935	0.52	+0.0
3,342,518	-		PFLU_RS14935	0.52	-0.2
3,342,582	+		PFLU_RS14935	0.57	-1.2
3,342,583	-		PFLU_RS14935	0.57	+1.6
3,342,583	-		PFLU_RS14935	0.57	-1.0
3,342,583	-		PFLU_RS14935	0.57	+0.3
3,342,623	+		PFLU_RS14935	0.60	+0.0
3,342,624	-		PFLU_RS14935	0.60	+2.0
3,342,624	-		PFLU_RS14935	0.60	+0.6
3,342,654	-		PFLU_RS14935	0.62	+1.6