Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS13265

Experiment: D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride
2,998,219	+		PFLU_RS13260	0.20	-1.5
2,998,552	-		PFLU_RS13260	0.51	+0.0
2,998,703	+		PFLU_RS13260	0.65	-1.5
2,998,703	+		PFLU_RS13260	0.65	+1.7
2,998,703	+		PFLU_RS13260	0.65	+0.9
2,998,703	+		PFLU_RS13260	0.65	-0.5
2,998,703	+		PFLU_RS13260	0.65	-1.5
2,998,703	+		PFLU_RS13260	0.65	-0.7
2,998,703	+		PFLU_RS13260	0.65	-2.5
2,998,703	+		PFLU_RS13260	0.65	+1.3
2,998,703	+		PFLU_RS13260	0.65	-1.5
2,998,703	+		PFLU_RS13260	0.65	-0.7
2,998,703	+		PFLU_RS13260	0.65	+5.7
2,998,704	-		PFLU_RS13260	0.65	+1.2
2,998,704	-		PFLU_RS13260	0.65	-2.7
2,998,704	-		PFLU_RS13260	0.65	-2.5
2,998,704	-		PFLU_RS13260	0.65	-1.1
2,998,776	-		PFLU_RS13260	0.72	-1.9
2,998,826	+		PFLU_RS13260	0.76	-1.1
2,998,827	-		PFLU_RS13260	0.77	-2.2
2,998,827	-		PFLU_RS13260	0.77	-2.4
2,998,827	-		PFLU_RS13260	0.77	+0.1
2,999,091	+				+1.7
2,999,091	+				-1.6
2,999,092	-				+1.2
2,999,133	+				+1.4
2,999,133	+				-0.9
2,999,133	+				+0.7
2,999,133	+				-1.9
2,999,133	+				-1.6
2,999,133	+				+0.7
2,999,133	+				-0.9
2,999,133	+				-2.2
2,999,133	+				+1.3
2,999,133	+				+0.1
2,999,133	+				+1.0
2,999,133	+				+0.5
2,999,133	+				+3.6
2,999,133	+				-1.6
2,999,134	-				+4.5
2,999,134	-				-0.5
2,999,134	-				-0.4
2,999,134	-				-0.9
2,999,134	-				+1.2
2,999,134	-				+2.0
2,999,134	-				-0.7
2,999,134	-				-0.3
2,999,134	-				-0.3
2,999,183	-				+0.2
2,999,183	-				-1.3
2,999,218	-				-0.9
2,999,218	-				+0.7
2,999,218	-				-0.0
2,999,328	+		PFLU_RS13265	0.24	-1.5
2,999,349	+		PFLU_RS13265	0.28	+0.7
2,999,349	+		PFLU_RS13265	0.28	+1.5
2,999,349	+		PFLU_RS13265	0.28	+0.9
2,999,349	+		PFLU_RS13265	0.28	+0.1
2,999,349	+		PFLU_RS13265	0.28	-2.2
2,999,349	+		PFLU_RS13265	0.28	+1.7
2,999,349	+		PFLU_RS13265	0.28	+0.4
2,999,349	+		PFLU_RS13265	0.28	+0.1
2,999,349	+		PFLU_RS13265	0.28	-1.1
2,999,349	+		PFLU_RS13265	0.28	+1.4
2,999,349	+		PFLU_RS13265	0.28	+1.3
2,999,349	+		PFLU_RS13265	0.28	-0.3
2,999,349	+		PFLU_RS13265	0.28	+1.4
2,999,349	+		PFLU_RS13265	0.28	-1.3
2,999,349	+		PFLU_RS13265	0.28	-1.3
2,999,350	-		PFLU_RS13265	0.28	-2.6
2,999,350	-		PFLU_RS13265	0.28	-2.7
2,999,350	-		PFLU_RS13265	0.28	+2.7
2,999,350	-		PFLU_RS13265	0.28	+0.1
2,999,350	-		PFLU_RS13265	0.28	+0.9
2,999,350	-		PFLU_RS13265	0.28	-0.9
2,999,350	-		PFLU_RS13265	0.28	-2.2
2,999,350	-		PFLU_RS13265	0.28	+0.7
2,999,350	-		PFLU_RS13265	0.28	+1.7
2,999,350	-		PFLU_RS13265	0.28	+2.6
2,999,350	-		PFLU_RS13265	0.28	-2.2
2,999,353	+		PFLU_RS13265	0.28	+0.1
2,999,353	+		PFLU_RS13265	0.28	-1.1
2,999,353	+		PFLU_RS13265	0.28	-1.4
2,999,353	+		PFLU_RS13265	0.28	+1.7
2,999,353	+		PFLU_RS13265	0.28	+0.7
2,999,353	+		PFLU_RS13265	0.28	+0.2
2,999,353	+		PFLU_RS13265	0.28	+0.1
2,999,353	+		PFLU_RS13265	0.28	+1.8
2,999,353	+		PFLU_RS13265	0.28	+0.9
2,999,353	+		PFLU_RS13265	0.28	-1.3
2,999,354	-		PFLU_RS13265	0.28	+0.4
2,999,354	-		PFLU_RS13265	0.28	+2.4
2,999,354	-		PFLU_RS13265	0.28	+1.4
2,999,354	-		PFLU_RS13265	0.28	+2.4
2,999,354	-		PFLU_RS13265	0.28	+1.1
2,999,354	-		PFLU_RS13265	0.28	-1.6
2,999,394	+		PFLU_RS13265	0.35	+0.1
2,999,394	+		PFLU_RS13265	0.35	+0.7
2,999,394	+		PFLU_RS13265	0.35	+1.7
2,999,394	+		PFLU_RS13265	0.35	-2.6
2,999,394	+		PFLU_RS13265	0.35	-0.1
2,999,394	+		PFLU_RS13265	0.35	+2.6
2,999,395	-		PFLU_RS13265	0.35	-0.1
2,999,395	-		PFLU_RS13265	0.35	-1.3
2,999,395	-		PFLU_RS13265	0.35	-2.3
2,999,395	-		PFLU_RS13265	0.35	+1.4
2,999,395	-		PFLU_RS13265	0.35	+1.4
2,999,395	-		PFLU_RS13265	0.35	+1.7
2,999,395	-		PFLU_RS13265	0.35	-0.3
2,999,395	-		PFLU_RS13265	0.35	+3.9
2,999,536	+		PFLU_RS13265	0.59	-0.6
2,999,537	-		PFLU_RS13265	0.60	+1.4
2,999,537	-		PFLU_RS13265	0.60	-0.8
2,999,628	+		PFLU_RS13265	0.75	+2.4
2,999,628	+		PFLU_RS13265	0.75	+1.2
2,999,628	+		PFLU_RS13265	0.75	+0.3
2,999,628	+		PFLU_RS13265	0.75	+0.6
2,999,628	+		PFLU_RS13265	0.75	+0.4
2,999,628	+		PFLU_RS13265	0.75	-0.6
2,999,628	+		PFLU_RS13265	0.75	+0.4
2,999,628	+		PFLU_RS13265	0.75	-1.3
2,999,628	+		PFLU_RS13265	0.75	+1.3
2,999,628	+		PFLU_RS13265	0.75	+2.3
2,999,628	+		PFLU_RS13265	0.75	-1.4
2,999,628	+		PFLU_RS13265	0.75	-1.1
2,999,628	+		PFLU_RS13265	0.75	-0.7
2,999,628	+		PFLU_RS13265	0.75	+1.4
2,999,629	-		PFLU_RS13265	0.75	-0.0
2,999,629	-		PFLU_RS13265	0.75	+1.0
2,999,629	-		PFLU_RS13265	0.75	+0.0
2,999,629	-		PFLU_RS13265	0.75	+0.7
2,999,629	-		PFLU_RS13265	0.75	-0.6
2,999,629	-		PFLU_RS13265	0.75	+1.6
2,999,629	-		PFLU_RS13265	0.75	+0.1
2,999,629	-		PFLU_RS13265	0.75	+0.4
2,999,629	-		PFLU_RS13265	0.75	+1.4
2,999,629	-		PFLU_RS13265	0.75	+1.7
2,999,629	-		PFLU_RS13265	0.75	+0.9
2,999,629	-		PFLU_RS13265	0.75	+1.0
2,999,629	-		PFLU_RS13265	0.75	-2.7
2,999,629	-		PFLU_RS13265	0.75	-0.6
2,999,629	-		PFLU_RS13265	0.75	+1.7
2,999,629	-		PFLU_RS13265	0.75	+2.2
2,999,629	-		PFLU_RS13265	0.75	+1.1
2,999,703	-		PFLU_RS13265	0.88	+1.7
2,999,703	-		PFLU_RS13265	0.88	+0.6
2,999,762	+				-1.0
2,999,762	+				-2.4
2,999,762	+				+3.3
2,999,762	+				-2.5
2,999,762	+				-1.1
2,999,762	+				-1.8
2,999,762	+				-0.7
2,999,762	+				-0.1
2,999,762	+				-1.5
2,999,762	+				-0.9
2,999,762	+				-2.3
2,999,762	+				+0.1
2,999,762	+				-1.0
2,999,762	+				+4.1
2,999,762	+				+0.7
2,999,762	+				+0.8
2,999,762	+				-1.5
2,999,762	+				+0.4
2,999,762	+				+2.2
2,999,762	+				-0.3
2,999,762	+				+1.9
2,999,763	-				-0.3
2,999,763	-				+0.2
2,999,763	-				-1.6
2,999,763	-				-1.6
2,999,763	-				+0.7
2,999,763	-				-1.9
2,999,763	-				-0.6
2,999,763	-				+0.7
2,999,763	-				-2.7
2,999,763	-				+1.5
2,999,763	-				+0.8
2,999,763	-				+0.6
2,999,763	-				-2.0
2,999,763	-				-0.1
2,999,763	-				-0.9
2,999,763	-				-1.5
2,999,763	-				-2.4
2,999,884	+				-2.5
2,999,907	+				-0.9
2,999,907	+				-0.3
2,999,907	+				-0.3
2,999,908	-				-2.7
2,999,908	-				+0.7
2,999,908	-				-1.5
3,000,003	+		PFLU_RS13270	0.21	-1.3
3,000,003	+		PFLU_RS13270	0.21	+2.0
3,000,003	+		PFLU_RS13270	0.21	+1.4
3,000,003	+		PFLU_RS13270	0.21	+2.4
3,000,004	-		PFLU_RS13270	0.21	+1.7
3,000,004	-		PFLU_RS13270	0.21	+1.9
3,000,004	-		PFLU_RS13270	0.21	-0.9
3,000,004	-		PFLU_RS13270	0.21	+0.7
3,000,004	-		PFLU_RS13270	0.21	+2.9
3,000,004	-		PFLU_RS13270	0.21	+1.2
3,000,004	-		PFLU_RS13270	0.21	-1.6
3,000,004	-		PFLU_RS13270	0.21	+0.0
3,000,006	+		PFLU_RS13270	0.21	+1.6
3,000,006	+		PFLU_RS13270	0.21	-1.1
3,000,006	+		PFLU_RS13270	0.21	-0.6
3,000,006	+		PFLU_RS13270	0.21	-0.5
3,000,006	+		PFLU_RS13270	0.21	-0.4
3,000,006	+		PFLU_RS13270	0.21	+0.8
3,000,006	+		PFLU_RS13270	0.21	-0.6
3,000,006	+		PFLU_RS13270	0.21	+2.3
3,000,006	+		PFLU_RS13270	0.21	+0.0
3,000,006	+		PFLU_RS13270	0.21	+1.7
3,000,006	+		PFLU_RS13270	0.21	+1.0
3,000,006	+		PFLU_RS13270	0.21	-0.6
3,000,006	+		PFLU_RS13270	0.21	+0.1
3,000,006	+		PFLU_RS13270	0.21	+0.1
3,000,006	+		PFLU_RS13270	0.21	-1.5
3,000,006	+		PFLU_RS13270	0.21	-1.5
3,000,006	+		PFLU_RS13270	0.21	-2.0
3,000,007	-		PFLU_RS13270	0.21	+0.9
3,000,007	-		PFLU_RS13270	0.21	-1.9
3,000,007	-		PFLU_RS13270	0.21	+1.7
3,000,007	-		PFLU_RS13270	0.21	+0.4
3,000,007	-		PFLU_RS13270	0.21	+0.7
3,000,007	-		PFLU_RS13270	0.21	-0.0
3,000,007	-		PFLU_RS13270	0.21	-2.5
3,000,007	-		PFLU_RS13270	0.21	-1.6
3,000,011	-		PFLU_RS13270	0.22	+1.3
3,000,130	+		PFLU_RS13270	0.36	+2.4
3,000,193	+		PFLU_RS13270	0.43	-1.6
3,000,193	+		PFLU_RS13270	0.43	-1.0
3,000,194	-		PFLU_RS13270	0.43	+0.1
3,000,375	+		PFLU_RS13270	0.65	+0.4
3,000,375	+		PFLU_RS13270	0.65	-0.6
3,000,375	+		PFLU_RS13270	0.65	-0.3
3,000,376	-		PFLU_RS13270	0.65	+1.5
3,000,376	-		PFLU_RS13270	0.65	+1.0
3,000,376	-		PFLU_RS13270	0.65	+1.4
3,000,376	-		PFLU_RS13270	0.65	-1.1
3,000,376	-		PFLU_RS13270	0.65	-1.1
3,000,406	+		PFLU_RS13270	0.69	-2.0
3,000,418	+		PFLU_RS13270	0.70	+0.6
3,000,418	+		PFLU_RS13270	0.70	-2.1
3,000,418	+		PFLU_RS13270	0.70	+0.6
3,000,419	-		PFLU_RS13270	0.70	-2.0
3,000,419	-		PFLU_RS13270	0.70	+0.5
3,000,419	-		PFLU_RS13270	0.70	-0.3
3,000,422	+		PFLU_RS13270	0.71	-0.3
3,000,422	+		PFLU_RS13270	0.71	-2.0
3,000,422	+		PFLU_RS13270	0.71	+0.4
3,000,422	+		PFLU_RS13270	0.71	-3.3
3,000,422	+		PFLU_RS13270	0.71	-1.3
3,000,423	-		PFLU_RS13270	0.71	+2.0
3,000,423	-		PFLU_RS13270	0.71	-0.4
3,000,423	-		PFLU_RS13270	0.71	+0.4
3,000,559	+		PFLU_RS13270	0.87	-1.3
3,000,559	+		PFLU_RS13270	0.87	+0.5
3,000,559	+		PFLU_RS13270	0.87	-0.9
3,000,559	+		PFLU_RS13270	0.87	-2.0
3,000,560	-		PFLU_RS13270	0.87	+1.1
3,000,583	+		PFLU_RS13270	0.90	-0.9
3,000,583	+		PFLU_RS13270	0.90	+0.4
3,000,583	+		PFLU_RS13270	0.90	+0.5
3,000,583	+		PFLU_RS13270	0.90	+1.8
3,000,584	-		PFLU_RS13270	0.90	-1.1
3,000,584	-		PFLU_RS13270	0.90	-0.9
3,000,584	-		PFLU_RS13270	0.90	+1.4
3,000,584	-		PFLU_RS13270	0.90	+1.3
3,000,686	+				+0.1
3,000,686	+				-0.4
3,000,686	+				-1.9
3,000,686	+				-0.6
3,000,686	+				-0.2
3,000,686	+				+0.0
3,000,686	+				+2.2
3,000,686	+				-0.5
3,000,696	+				+1.1
3,000,696	+				-2.2
3,000,696	+				-0.3
3,000,697	-				+0.7
3,000,697	-				+0.7
3,000,697	-				-0.7
3,000,699	+				-0.9
3,000,724	+				+0.2
3,000,724	+				+1.1
3,000,725	-				-0.6
3,000,725	-				+1.9