Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS12205

Experiment: D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride
2,706,934	+				-1.6
2,706,980	+				-1.2
2,706,981	-				-1.7
2,707,005	-				-1.4
2,707,005	-				+3.4
2,707,075	+				+2.5
2,707,075	+				+1.8
2,707,076	-				-1.7
2,707,076	-				+1.6
2,707,076	-				+0.9
2,707,076	-				+1.4
2,707,090	+				-1.6
2,707,090	+				+1.8
2,707,098	+				-1.2
2,707,098	+				+0.5
2,707,098	+				-0.2
2,707,098	+				-1.2
2,707,098	+				-0.3
2,707,098	+				-0.8
2,707,098	+				+1.0
2,707,099	-				-0.0
2,707,099	-				-1.8
2,707,161	+				-2.8
2,707,169	+				-1.1
2,707,169	+				+0.0
2,707,169	+				-0.8
2,707,169	+				+0.3
2,707,169	+				+0.2
2,707,170	-				-2.0
2,707,170	-				-0.9
2,707,170	-				-0.4
2,707,170	-				+0.9
2,707,179	+				-0.1
2,707,180	-				-1.2
2,707,180	-				-1.2
2,707,180	-				-2.6
2,707,180	-				+1.5
2,707,185	+				+0.1
2,707,185	+				+1.4
2,707,185	+				+0.8
2,707,185	+				-0.8
2,707,185	+				-0.2
2,707,185	+				-0.8
2,707,185	+				+0.3
2,707,185	+				+1.0
2,707,185	+				+1.2
2,707,185	+				+0.2
2,707,185	+				+0.6
2,707,186	-				+1.6
2,707,186	-				+1.4
2,707,186	-				-0.7
2,707,186	-				+0.6
2,707,186	-				+1.9
2,707,186	-				-1.6
2,707,186	-				+1.4
2,707,186	-				+0.5
2,707,186	-				+0.2
2,707,188	+				-2.7
2,707,188	+				+1.0
2,707,188	+				-1.3
2,707,188	+				+1.8
2,707,188	+				+0.4
2,707,188	+				+0.8
2,707,188	+				+0.4
2,707,188	+				-1.0
2,707,188	+				-1.9
2,707,188	+				+1.0
2,707,189	-				-0.6
2,707,189	-				-1.4
2,707,189	-				-0.9
2,707,189	-				+2.3
2,707,229	+		PFLU_RS31570	0.31	+2.4
2,707,230	-		PFLU_RS31570	0.32	-2.6
2,707,230	-		PFLU_RS31570	0.32	+0.1
2,707,230	-		PFLU_RS31570	0.32	-0.2
2,707,230	-		PFLU_RS31570	0.32	+1.5
2,707,230	-		PFLU_RS31570	0.32	-2.1
2,707,230	-		PFLU_RS31570	0.32	+3.5
2,707,230	-		PFLU_RS31570	0.32	+1.8
2,707,230	-		PFLU_RS31570	0.32	-1.3
2,707,230	-		PFLU_RS31570	0.32	-0.0
2,707,261	+		PFLU_RS31570	0.53	+2.0
2,707,261	+		PFLU_RS31570	0.53	+1.9
2,707,262	-		PFLU_RS31570	0.53	-1.6
2,707,262	-		PFLU_RS31570	0.53	+3.1
2,707,262	-		PFLU_RS31570	0.53	-1.4
2,707,286	+		PFLU_RS31570	0.70	-0.5
2,707,286	+		PFLU_RS31570	0.70	+1.6
2,707,286	+		PFLU_RS31570	0.70	+0.2
2,707,286	+		PFLU_RS31570	0.70	-0.3
2,707,287	-		PFLU_RS31570	0.71	+1.5
2,707,300	+		PFLU_RS31570	0.79	+0.7
2,707,300	+		PFLU_RS31570	0.79	+0.6
2,707,301	-		PFLU_RS31570	0.80	+0.4
2,707,301	-		PFLU_RS31570	0.80	-0.4
2,707,325	-				-1.9
2,707,520	-		PFLU_RS12200	0.44	-2.3
2,707,520	-		PFLU_RS12200	0.44	+0.8
2,707,560	+		PFLU_RS12200	0.54	-0.8
2,707,561	-		PFLU_RS12200	0.54	-0.3
2,707,561	-		PFLU_RS12200	0.54	-2.4
2,707,578	+		PFLU_RS12200	0.58	-1.0
2,707,618	+		PFLU_RS12200	0.67	-2.2
2,707,618	+		PFLU_RS12200	0.67	-1.6
2,707,619	-		PFLU_RS12200	0.68	+1.8
2,707,620	+		PFLU_RS12200	0.68	+2.0
2,707,620	+		PFLU_RS12200	0.68	+1.4
2,707,620	+		PFLU_RS12200	0.68	-2.0
2,707,620	+		PFLU_RS12200	0.68	-0.5
2,707,620	+		PFLU_RS12200	0.68	+0.9
2,707,620	+		PFLU_RS12200	0.68	+0.6
2,707,620	+		PFLU_RS12200	0.68	+2.6
2,707,620	+		PFLU_RS12200	0.68	+2.7
2,707,621	-		PFLU_RS12200	0.68	-1.2
2,707,621	-		PFLU_RS12200	0.68	-0.6
2,707,621	-		PFLU_RS12200	0.68	-1.0
2,707,621	-		PFLU_RS12200	0.68	+0.7
2,707,621	-		PFLU_RS12200	0.68	+0.3
2,707,621	-		PFLU_RS12200	0.68	+2.2
2,707,621	-		PFLU_RS12200	0.68	+0.2
2,707,674	+		PFLU_RS12200	0.81	-1.8
2,707,729	+				+0.7
2,707,729	+				-1.0
2,707,729	+				+0.8
2,707,730	-				-1.9
2,707,730	-				-1.4
2,707,730	-				-0.8
2,707,754	+				+0.2
2,707,804	+				-1.1
2,707,804	+				+0.1
2,707,805	-				+0.4
2,707,805	-				+0.2
2,707,841	+				-1.9
2,707,842	-				-2.5
2,707,844	-				+0.1
2,707,851	+				+1.2
2,707,852	-				-0.6
2,707,884	+				-1.0
2,707,884	+				-0.1
2,707,894	+				+1.8
2,707,894	+				+2.0
2,707,895	-				+0.2
2,707,905	+				-2.6
2,707,905	+				+0.5
2,707,905	+				-0.7
2,707,905	+				-0.8
2,707,906	-				+0.6
2,707,906	-				-1.7
2,707,906	-				+0.9
2,707,908	+				-3.1
2,707,908	+				+1.2
2,707,908	+				+0.9
2,707,908	+				+2.4
2,707,908	+				+3.1
2,707,908	+				+0.8
2,707,909	-				+1.1
2,707,909	-				+0.5
2,707,912	+				+3.0
2,707,912	+				+0.5
2,707,912	+				-1.7
2,707,913	-				+0.1
2,707,913	-				+1.2
2,707,956	+				+0.6
2,708,177	+		PFLU_RS12205	0.68	-1.7
2,708,178	-		PFLU_RS12205	0.68	+2.8
2,708,178	-		PFLU_RS12205	0.68	+2.3
2,708,179	+		PFLU_RS12205	0.69	+1.1
2,708,180	-		PFLU_RS12205	0.69	+2.2
2,708,180	-		PFLU_RS12205	0.69	+0.4
2,708,291	+				+0.9
2,708,292	-				-3.8
2,708,292	-				+1.4
2,708,292	-				-1.2
2,708,292	-				-0.1
2,708,292	-				+1.0
2,708,292	-				+1.5
2,708,358	+				+1.6
2,708,358	+				+0.8
2,708,358	+				+0.8
2,708,358	+				-0.8
2,708,358	+				-1.0
2,708,358	+				-1.8
2,708,358	+				+0.0
2,708,359	-				+0.2
2,708,359	-				-0.1
2,708,359	-				-2.1
2,708,360	+				-0.0
2,708,360	+				+0.8
2,708,377	+				+0.8
2,708,381	-				-1.9
2,708,414	-				-1.0
2,708,414	-				-1.7
2,708,560	+		PFLU_RS30720	0.16	-0.2
2,708,576	-		PFLU_RS30720	0.17	+2.3
2,708,621	+		PFLU_RS30720	0.22	-1.6
2,708,622	-		PFLU_RS30720	0.22	+0.8
2,708,630	-		PFLU_RS30720	0.23	+0.2
2,708,650	-		PFLU_RS30720	0.25	+1.8
2,708,689	+		PFLU_RS30720	0.29	+2.8
2,708,689	+		PFLU_RS30720	0.29	+1.8
2,708,690	-		PFLU_RS30720	0.29	+2.3
2,708,704	+		PFLU_RS30720	0.31	+1.8
2,708,798	-		PFLU_RS30720	0.40	-1.2
2,708,828	-		PFLU_RS30720	0.43	+2.6
2,708,861	-		PFLU_RS30720	0.47	+3.8
2,708,867	-		PFLU_RS30720	0.47	-0.4
2,708,923	+		PFLU_RS30720	0.53	-1.0
2,708,924	-		PFLU_RS30720	0.53	+0.8
2,708,925	+		PFLU_RS30720	0.53	-2.8
2,708,994	+		PFLU_RS30720	0.61	+1.6
2,708,995	-		PFLU_RS30720	0.61	+0.7
2,709,028	+		PFLU_RS30720	0.64	-0.2
2,709,029	-		PFLU_RS30720	0.64	-0.3
2,709,045	+		PFLU_RS30720	0.66	-2.0
2,709,046	-		PFLU_RS30720	0.66	-1.6
2,709,088	-		PFLU_RS30720	0.70	-1.2
2,709,091	+		PFLU_RS30720	0.71	+0.7
2,709,091	+		PFLU_RS30720	0.71	+3.0
2,709,100	-		PFLU_RS30720	0.72	+0.2
2,709,127	+		PFLU_RS30720	0.74	-0.6
2,709,127	+		PFLU_RS30720	0.74	-1.5
2,709,127	+		PFLU_RS30720	0.74	+0.4
2,709,127	+		PFLU_RS30720	0.74	+1.4
2,709,128	-		PFLU_RS30720	0.75	+0.2
2,709,128	-		PFLU_RS30720	0.75	+0.0
2,709,128	-		PFLU_RS30720	0.75	-0.8
2,709,156	+		PFLU_RS30720	0.77	-1.9
2,709,156	+		PFLU_RS30720	0.77	-0.5
2,709,156	+		PFLU_RS30720	0.77	+0.8
2,709,156	+		PFLU_RS30720	0.77	+1.0
2,709,156	+		PFLU_RS30720	0.77	+1.0
2,709,156	+		PFLU_RS30720	0.77	-0.3
2,709,156	+		PFLU_RS30720	0.77	-0.2
2,709,157	-		PFLU_RS30720	0.78	-1.4
2,709,157	-		PFLU_RS30720	0.78	-1.9
2,709,157	-		PFLU_RS30720	0.78	-1.6
2,709,157	-		PFLU_RS30720	0.78	-0.8
2,709,157	-		PFLU_RS30720	0.78	+3.3
2,709,166	+		PFLU_RS30720	0.79	-3.1
2,709,181	+		PFLU_RS30720	0.80	+0.2
2,709,181	+		PFLU_RS30720	0.80	+1.9
2,709,200	+		PFLU_RS30720	0.82	-2.2
2,709,200	+		PFLU_RS30720	0.82	-1.2
2,709,200	+		PFLU_RS30720	0.82	+1.6
2,709,200	+		PFLU_RS30720	0.82	+0.8
2,709,200	+		PFLU_RS30720	0.82	-2.0
2,709,200	+		PFLU_RS30720	0.82	+0.5
2,709,200	+		PFLU_RS30720	0.82	+1.3
2,709,200	+		PFLU_RS30720	0.82	+0.3
2,709,200	+		PFLU_RS30720	0.82	-1.7
2,709,201	-		PFLU_RS30720	0.82	+2.1
2,709,201	-		PFLU_RS30720	0.82	-0.2
2,709,201	-		PFLU_RS30720	0.82	-1.4
2,709,201	-		PFLU_RS30720	0.82	+3.2
2,709,201	-		PFLU_RS30720	0.82	-1.6
2,709,201	-		PFLU_RS30720	0.82	-0.8
2,709,201	-		PFLU_RS30720	0.82	-1.8
2,709,201	-		PFLU_RS30720	0.82	+1.8
2,709,201	-		PFLU_RS30720	0.82	-1.7
2,709,201	-		PFLU_RS30720	0.82	-0.8
2,709,201	-		PFLU_RS30720	0.82	+1.1
2,709,201	-		PFLU_RS30720	0.82	-0.2
2,709,201	-		PFLU_RS30720	0.82	+1.8
2,709,201	-		PFLU_RS30720	0.82	+1.8
2,709,204	+		PFLU_RS30720	0.82	-1.2
2,709,205	-		PFLU_RS30720	0.83	-0.2
2,709,205	-		PFLU_RS30720	0.83	+0.3
2,709,247	+		PFLU_RS30720	0.87	-0.1
2,709,247	+		PFLU_RS30720	0.87	-1.9
2,709,248	-		PFLU_RS30720	0.87	-0.2