Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS28915

Experiment: D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride
6,427,828	-		PFLU_RS28905	0.55	+0.6
6,427,828	-		PFLU_RS28905	0.55	+0.8
6,427,898	+		PFLU_RS28905	0.61	-0.1
6,427,898	+		PFLU_RS28905	0.61	+0.2
6,427,898	+		PFLU_RS28905	0.61	+1.4
6,427,898	+		PFLU_RS28905	0.61	+0.5
6,427,986	+		PFLU_RS28905	0.69	-2.1
6,427,987	-		PFLU_RS28905	0.69	-1.6
6,428,023	-		PFLU_RS28905	0.72	+1.0
6,428,023	-		PFLU_RS28905	0.72	-3.0
6,428,023	-		PFLU_RS28905	0.72	-0.8
6,428,083	+		PFLU_RS28905	0.77	+1.8
6,428,084	-		PFLU_RS28905	0.77	+0.9
6,428,084	-		PFLU_RS28905	0.77	+0.9
6,428,108	-		PFLU_RS28905	0.79	+1.8
6,428,164	-		PFLU_RS28905	0.84	+0.7
6,428,170	-		PFLU_RS28905	0.85	+1.1
6,428,222	+		PFLU_RS28905	0.89	+0.5
6,428,222	+		PFLU_RS28905	0.89	-0.7
6,428,222	+		PFLU_RS28905	0.89	-0.1
6,428,222	+		PFLU_RS28905	0.89	-1.5
6,428,222	+		PFLU_RS28905	0.89	-0.5
6,428,222	+		PFLU_RS28905	0.89	+0.8
6,428,222	+		PFLU_RS28905	0.89	-2.8
6,428,222	+		PFLU_RS28905	0.89	-0.2
6,428,222	+		PFLU_RS28905	0.89	-0.2
6,428,222	+		PFLU_RS28905	0.89	-1.0
6,428,222	+		PFLU_RS28905	0.89	+0.6
6,428,222	+		PFLU_RS28905	0.89	+0.7
6,428,222	+		PFLU_RS28905	0.89	+0.7
6,428,222	+		PFLU_RS28905	0.89	-1.0
6,428,222	+		PFLU_RS28905	0.89	-0.8
6,428,222	+		PFLU_RS28905	0.89	-1.5
6,428,222	+		PFLU_RS28905	0.89	-0.1
6,428,222	+		PFLU_RS28905	0.89	-1.6
6,428,222	+		PFLU_RS28905	0.89	-0.3
6,428,222	+		PFLU_RS28905	0.89	-0.1
6,428,222	+		PFLU_RS28905	0.89	+0.1
6,428,222	+		PFLU_RS28905	0.89	-0.4
6,428,222	+		PFLU_RS28905	0.89	-0.3
6,428,222	+		PFLU_RS28905	0.89	+0.7
6,428,222	+		PFLU_RS28905	0.89	-2.8
6,428,222	+		PFLU_RS28905	0.89	-0.7
6,428,223	-		PFLU_RS28905	0.89	+0.9
6,428,223	-		PFLU_RS28905	0.89	+0.2
6,428,223	-		PFLU_RS28905	0.89	+1.5
6,428,223	-		PFLU_RS28905	0.89	+0.9
6,428,223	-		PFLU_RS28905	0.89	+1.2
6,428,223	-		PFLU_RS28905	0.89	-0.1
6,428,223	-		PFLU_RS28905	0.89	-0.3
6,428,223	-		PFLU_RS28905	0.89	-0.3
6,428,223	-		PFLU_RS28905	0.89	-1.7
6,428,276	+				-1.1
6,428,276	+				-2.5
6,428,276	+				+0.5
6,428,276	+				-3.6
6,428,332	+				+0.7
6,428,332	+				+1.9
6,428,332	+				-0.2
6,428,333	-				+0.9
6,428,406	+				+1.2
6,428,406	+				-0.8
6,428,556	+		PFLU_RS28910	0.45	+0.3
6,428,556	+		PFLU_RS28910	0.45	+1.2
6,428,556	+		PFLU_RS28910	0.45	+1.9
6,428,556	+		PFLU_RS28910	0.45	+1.5
6,428,556	+		PFLU_RS28910	0.45	-0.5
6,428,556	+		PFLU_RS28910	0.45	+1.9
6,428,556	+		PFLU_RS28910	0.45	-1.1
6,428,556	+		PFLU_RS28910	0.45	-0.3
6,428,556	+		PFLU_RS28910	0.45	+0.9
6,428,556	+		PFLU_RS28910	0.45	+2.5
6,428,556	+		PFLU_RS28910	0.45	-0.0
6,428,556	+		PFLU_RS28910	0.45	+0.1
6,428,556	+		PFLU_RS28910	0.45	+0.5
6,428,556	+		PFLU_RS28910	0.45	+2.2
6,428,556	+		PFLU_RS28910	0.45	+0.4
6,428,557	-		PFLU_RS28910	0.45	+2.1
6,428,557	-		PFLU_RS28910	0.45	+2.2
6,428,557	-		PFLU_RS28910	0.45	+2.5
6,428,557	-		PFLU_RS28910	0.45	+1.8
6,428,557	-		PFLU_RS28910	0.45	+0.9
6,428,557	-		PFLU_RS28910	0.45	+1.4
6,428,557	-		PFLU_RS28910	0.45	-2.1
6,428,557	-		PFLU_RS28910	0.45	+0.7
6,428,557	-		PFLU_RS28910	0.45	+1.7
6,428,557	-		PFLU_RS28910	0.45	-0.7
6,428,557	-		PFLU_RS28910	0.45	+1.9
6,428,557	-		PFLU_RS28910	0.45	+2.3
6,428,557	-		PFLU_RS28910	0.45	+0.2
6,428,557	-		PFLU_RS28910	0.45	-0.3
6,428,557	-		PFLU_RS28910	0.45	+1.1
6,428,557	-		PFLU_RS28910	0.45	+0.7
6,428,557	-		PFLU_RS28910	0.45	-0.4
6,428,557	-		PFLU_RS28910	0.45	+2.9
6,428,557	-		PFLU_RS28910	0.45	-0.1
6,428,557	-		PFLU_RS28910	0.45	+1.3
6,428,557	-		PFLU_RS28910	0.45	+2.7
6,428,557	-		PFLU_RS28910	0.45	+2.3
6,428,557	-		PFLU_RS28910	0.45	-0.4
6,428,557	-		PFLU_RS28910	0.45	+0.9
6,428,560	+		PFLU_RS28910	0.46	+0.2
6,428,683	+		PFLU_RS28910	0.78	-0.8
6,428,684	-		PFLU_RS28910	0.78	-0.3
6,428,767	+				+1.2
6,428,767	+				-1.9
6,428,767	+				-0.1
6,428,767	+				+0.5
6,428,767	+				+0.9
6,428,767	+				+0.5
6,428,768	-				+2.0
6,428,768	-				+1.9
6,428,768	-				+1.4
6,428,768	-				+1.2
6,428,768	-				+1.2
6,428,768	-				+1.0
6,428,768	-				+1.1
6,428,768	-				-2.4
6,428,768	-				-0.0
6,428,768	-				-1.3
6,428,768	-				+1.7
6,428,768	-				+1.1
6,428,768	-				-1.3
6,428,768	-				-0.1
6,428,787	+				-0.3
6,428,787	+				-0.3
6,428,787	+				+0.5
6,428,787	+				-0.4
6,428,787	+				-0.2
6,428,788	-				+0.2
6,428,788	-				+2.5
6,428,788	-				+0.8
6,428,788	-				+0.2
6,428,788	-				+1.5
6,428,788	-				-0.4
6,428,788	-				+0.2
6,428,788	-				-0.2
6,428,788	-				+0.9
6,428,788	-				+0.2
6,428,788	-				+1.5
6,428,817	+				+0.4
6,428,817	+				-1.1
6,428,817	+				+1.1
6,428,817	+				-0.6
6,428,817	+				+0.4
6,428,818	-				-2.0
6,428,822	+				-1.0
6,428,822	+				-0.1
6,428,822	+				+0.2
6,428,822	+				-0.1
6,428,822	+				-3.6
6,428,822	+				+0.1
6,428,822	+				+0.0
6,428,822	+				-2.9
6,428,822	+				+0.3
6,428,822	+				-0.1
6,428,823	-				-0.4
6,428,823	-				-0.3
6,428,823	-				+1.2
6,428,823	-				-0.5
6,428,823	-				+0.1
6,428,927	-				-2.0
6,428,958	+		PFLU_RS28915	0.13	+0.5
6,428,958	+		PFLU_RS28915	0.13	-1.4
6,428,958	+		PFLU_RS28915	0.13	-1.2
6,428,958	+		PFLU_RS28915	0.13	-1.8
6,428,959	-		PFLU_RS28915	0.13	-0.5
6,428,959	-		PFLU_RS28915	0.13	-1.6
6,428,959	-		PFLU_RS28915	0.13	+0.5
6,428,970	+		PFLU_RS28915	0.14	-1.8
6,428,970	+		PFLU_RS28915	0.14	+1.5
6,428,970	+		PFLU_RS28915	0.14	-1.9
6,428,971	-		PFLU_RS28915	0.14	-0.8
6,428,971	-		PFLU_RS28915	0.14	-1.0
6,428,971	-		PFLU_RS28915	0.14	-0.8
6,428,971	-		PFLU_RS28915	0.14	+0.4
6,428,971	-		PFLU_RS28915	0.14	-0.8
6,428,971	-		PFLU_RS28915	0.14	-1.1
6,428,971	-		PFLU_RS28915	0.14	-2.4
6,428,971	-		PFLU_RS28915	0.14	-1.5
6,428,971	-		PFLU_RS28915	0.14	-2.6
6,428,971	-		PFLU_RS28915	0.14	-3.4
6,428,971	-		PFLU_RS28915	0.14	-1.5
6,428,997	+		PFLU_RS28915	0.16	-1.8
6,428,998	-		PFLU_RS28915	0.16	-2.8
6,428,998	-		PFLU_RS28915	0.16	-2.6
6,429,028	+		PFLU_RS28915	0.19	-0.1
6,429,028	+		PFLU_RS28915	0.19	-2.6
6,429,049	+		PFLU_RS28915	0.21	+0.5
6,429,145	-		PFLU_RS28915	0.30	-1.3
6,429,201	-		PFLU_RS28915	0.35	-1.8
6,429,231	+		PFLU_RS28915	0.38	+1.1
6,429,232	-		PFLU_RS28915	0.38	-2.7
6,429,261	+		PFLU_RS28915	0.41	-2.3
6,429,261	+		PFLU_RS28915	0.41	+1.5
6,429,261	+		PFLU_RS28915	0.41	+0.2
6,429,261	+		PFLU_RS28915	0.41	-1.3
6,429,262	-		PFLU_RS28915	0.41	-0.3
6,429,262	-		PFLU_RS28915	0.41	-3.1
6,429,262	-		PFLU_RS28915	0.41	-2.0
6,429,262	-		PFLU_RS28915	0.41	+0.2
6,429,339	+		PFLU_RS28915	0.48	+0.7
6,429,340	-		PFLU_RS28915	0.48	+1.2
6,429,341	+		PFLU_RS28915	0.48	-3.0
6,429,341	+		PFLU_RS28915	0.48	-3.1
6,429,341	+		PFLU_RS28915	0.48	-1.4
6,429,341	+		PFLU_RS28915	0.48	-0.1
6,429,341	+		PFLU_RS28915	0.48	-0.7
6,429,342	-		PFLU_RS28915	0.48	-2.6
6,429,342	-		PFLU_RS28915	0.48	+0.6
6,429,357	+		PFLU_RS28915	0.49	-1.4
6,429,357	+		PFLU_RS28915	0.49	-2.6
6,429,358	-		PFLU_RS28915	0.50	-0.7
6,429,512	+		PFLU_RS28915	0.64	-1.3
6,429,512	+		PFLU_RS28915	0.64	-1.7
6,429,512	+		PFLU_RS28915	0.64	-1.4
6,429,512	+		PFLU_RS28915	0.64	-2.7
6,429,512	+		PFLU_RS28915	0.64	+2.5
6,429,512	+		PFLU_RS28915	0.64	-0.6
6,429,512	+		PFLU_RS28915	0.64	-2.5
6,429,512	+		PFLU_RS28915	0.64	-1.6
6,429,512	+		PFLU_RS28915	0.64	-1.5
6,429,512	+		PFLU_RS28915	0.64	-1.9
6,429,512	+		PFLU_RS28915	0.64	-1.7
6,429,512	+		PFLU_RS28915	0.64	-2.4
6,429,512	+		PFLU_RS28915	0.64	-0.1
6,429,513	-		PFLU_RS28915	0.64	-1.2
6,429,513	-		PFLU_RS28915	0.64	-0.1
6,429,513	-		PFLU_RS28915	0.64	-0.7
6,429,513	-		PFLU_RS28915	0.64	-0.1
6,429,513	-		PFLU_RS28915	0.64	-2.5
6,429,513	-		PFLU_RS28915	0.64	-0.5
6,429,513	-		PFLU_RS28915	0.64	-0.3
6,429,513	-		PFLU_RS28915	0.64	-1.5
6,429,513	-		PFLU_RS28915	0.64	+2.8
6,429,513	-		PFLU_RS28915	0.64	-0.7
6,429,513	-		PFLU_RS28915	0.64	-2.9
6,429,513	-		PFLU_RS28915	0.64	-2.3
6,429,513	-		PFLU_RS28915	0.64	-0.7
6,429,513	-		PFLU_RS28915	0.64	-0.3
6,429,513	-		PFLU_RS28915	0.64	-3.1
6,429,513	-		PFLU_RS28915	0.64	-2.3
6,429,513	-		PFLU_RS28915	0.64	+0.2
6,429,513	-		PFLU_RS28915	0.64	-1.6
6,429,513	-		PFLU_RS28915	0.64	+1.8
6,429,650	+		PFLU_RS28915	0.77	-1.4
6,429,650	+		PFLU_RS28915	0.77	-0.7
6,429,650	+		PFLU_RS28915	0.77	-1.3
6,429,650	+		PFLU_RS28915	0.77	+1.3
6,429,651	-		PFLU_RS28915	0.77	-2.6
6,429,651	-		PFLU_RS28915	0.77	-0.1
6,429,651	-		PFLU_RS28915	0.77	-2.3
6,429,651	-		PFLU_RS28915	0.77	-1.3
6,429,651	-		PFLU_RS28915	0.77	+1.5
6,429,651	-		PFLU_RS28915	0.77	-1.8
6,429,651	-		PFLU_RS28915	0.77	-1.8
6,429,651	-		PFLU_RS28915	0.77	-2.2
6,429,651	-		PFLU_RS28915	0.77	-1.1
6,429,651	-		PFLU_RS28915	0.77	+1.5
6,429,651	-		PFLU_RS28915	0.77	-1.4
6,429,651	-		PFLU_RS28915	0.77	+0.2
6,429,750	+		PFLU_RS28915	0.86	-1.4
6,429,750	+		PFLU_RS28915	0.86	-2.4
6,429,750	+		PFLU_RS28915	0.86	-1.4
6,429,750	+		PFLU_RS28915	0.86	-0.4
6,429,750	+		PFLU_RS28915	0.86	-2.0
6,429,750	+		PFLU_RS28915	0.86	-0.8
6,429,750	+		PFLU_RS28915	0.86	-1.9
6,429,750	+		PFLU_RS28915	0.86	-2.9
6,429,750	+		PFLU_RS28915	0.86	-0.7
6,429,750	+		PFLU_RS28915	0.86	+1.5
6,429,750	+		PFLU_RS28915	0.86	-1.2
6,429,751	-		PFLU_RS28915	0.86	-1.9
6,429,751	-		PFLU_RS28915	0.86	-0.3
6,429,751	-		PFLU_RS28915	0.86	-0.8
6,429,751	-		PFLU_RS28915	0.86	-1.8
6,429,757	+		PFLU_RS28915	0.86	+1.0
6,429,757	+		PFLU_RS28915	0.86	-2.0
6,429,757	+		PFLU_RS28915	0.86	-2.3
6,429,757	+		PFLU_RS28915	0.86	+0.2
6,429,757	+		PFLU_RS28915	0.86	-1.8
6,429,757	+		PFLU_RS28915	0.86	-0.8
6,429,757	+		PFLU_RS28915	0.86	+0.8
6,429,757	+		PFLU_RS28915	0.86	-2.2
6,429,757	+		PFLU_RS28915	0.86	-2.0
6,429,757	+		PFLU_RS28915	0.86	-1.4
6,429,757	+		PFLU_RS28915	0.86	-1.3
6,429,757	+		PFLU_RS28915	0.86	-1.4
6,429,757	+		PFLU_RS28915	0.86	-1.5
6,429,757	+		PFLU_RS28915	0.86	-0.7
6,429,758	-		PFLU_RS28915	0.87	-0.3
6,429,758	-		PFLU_RS28915	0.87	-2.2
6,429,758	-		PFLU_RS28915	0.87	-2.8
6,429,758	-		PFLU_RS28915	0.87	-2.0
6,429,758	-		PFLU_RS28915	0.87	+0.2
6,429,758	-		PFLU_RS28915	0.87	+0.3
6,429,758	-		PFLU_RS28915	0.87	-1.7
6,429,758	-		PFLU_RS28915	0.87	+0.2
6,429,758	-		PFLU_RS28915	0.87	-1.1
6,429,816	-				+1.0
6,429,816	-				-1.3
6,429,816	-				-1.4
6,429,829	-				-2.5
6,429,829	-				-1.7
6,429,829	-				-2.5
6,429,881	+				-1.7
6,429,881	+				-2.9
6,429,881	+				-1.8
6,429,881	+				-1.3
6,429,881	+				+1.5
6,429,881	+				-0.5
6,429,882	-				-2.3
6,429,891	+				+0.1
6,429,891	+				-2.0
6,429,892	-				-0.1
6,429,892	-				-2.4
6,429,892	-				-0.2
6,429,892	-				-0.2
6,429,892	-				+0.5
6,429,968	+				-0.1
6,429,968	+				-0.1
6,429,968	+				-1.4
6,429,968	+				-0.4
6,429,968	+				-0.3
6,429,969	-				+0.7
6,429,969	-				-1.5
6,429,969	-				+3.8
6,430,035	+				-2.9
6,430,036	-				-1.0
6,430,048	+				-0.3
6,430,061	+				-1.0
6,430,062	-				+0.3
6,430,062	-				-0.6
6,430,138	+				-0.5
6,430,304	+		PFLU_RS28920	0.15	+2.3
6,430,304	+		PFLU_RS28920	0.15	+0.9
6,430,304	+		PFLU_RS28920	0.15	+0.1
6,430,304	+		PFLU_RS28920	0.15	-2.4
6,430,304	+		PFLU_RS28920	0.15	+0.3
6,430,305	-		PFLU_RS28920	0.15	+1.0
6,430,305	-		PFLU_RS28920	0.15	-0.3
6,430,305	-		PFLU_RS28920	0.15	+1.6
6,430,305	-		PFLU_RS28920	0.15	-1.0
6,430,404	-		PFLU_RS28920	0.21	+1.4
6,430,431	-		PFLU_RS28920	0.23	+1.2
6,430,431	-		PFLU_RS28920	0.23	-0.1
6,430,431	-		PFLU_RS28920	0.23	+1.1
6,430,526	+		PFLU_RS28920	0.29	-0.8
6,430,526	+		PFLU_RS28920	0.29	+2.2
6,430,526	+		PFLU_RS28920	0.29	-2.3
6,430,526	+		PFLU_RS28920	0.29	-0.7
6,430,527	-		PFLU_RS28920	0.29	-0.7
6,430,527	-		PFLU_RS28920	0.29	+0.1
6,430,683	+		PFLU_RS28920	0.39	+1.3
6,430,694	+		PFLU_RS28920	0.39	-1.4
6,430,694	+		PFLU_RS28920	0.39	-0.2
6,430,694	+		PFLU_RS28920	0.39	+0.4
6,430,694	+		PFLU_RS28920	0.39	-1.0
6,430,694	+		PFLU_RS28920	0.39	-1.7
6,430,694	+		PFLU_RS28920	0.39	+1.3
6,430,694	+		PFLU_RS28920	0.39	-0.1
6,430,694	+		PFLU_RS28920	0.39	+0.3
6,430,695	-		PFLU_RS28920	0.39	+1.6
6,430,695	-		PFLU_RS28920	0.39	-0.9
6,430,695	-		PFLU_RS28920	0.39	-2.7
6,430,695	-		PFLU_RS28920	0.39	+0.2
6,430,695	-		PFLU_RS28920	0.39	+0.3
6,430,695	-		PFLU_RS28920	0.39	+0.9
6,430,721	+		PFLU_RS28920	0.41	-0.7
6,430,721	+		PFLU_RS28920	0.41	-2.6
6,430,805	-		PFLU_RS28920	0.46	+0.9
6,430,805	-		PFLU_RS28920	0.46	-0.8
6,430,805	-		PFLU_RS28920	0.46	+0.5
6,430,856	+		PFLU_RS28920	0.49	-0.6
6,430,856	+		PFLU_RS28920	0.49	-1.5
6,430,856	+		PFLU_RS28920	0.49	-0.7
6,430,856	+		PFLU_RS28920	0.49	+0.7
6,430,857	-		PFLU_RS28920	0.49	+2.0
6,430,857	-		PFLU_RS28920	0.49	+1.5
6,430,857	-		PFLU_RS28920	0.49	+0.5
6,430,857	-		PFLU_RS28920	0.49	-2.1