Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS27690

Experiment: D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride
6,162,593	+		PFLU_RS27685	0.62	-0.7
6,162,593	+		PFLU_RS27685	0.62	-2.3
6,162,702	+		PFLU_RS27685	0.67	-0.2
6,162,702	+		PFLU_RS27685	0.67	-2.7
6,162,702	+		PFLU_RS27685	0.67	-2.9
6,162,702	+		PFLU_RS27685	0.67	-2.0
6,162,703	-		PFLU_RS27685	0.67	-0.3
6,162,703	-		PFLU_RS27685	0.67	-1.6
6,162,703	-		PFLU_RS27685	0.67	+0.6
6,162,891	+		PFLU_RS27685	0.76	-0.9
6,162,891	+		PFLU_RS27685	0.76	-1.4
6,162,891	+		PFLU_RS27685	0.76	-1.5
6,162,891	+		PFLU_RS27685	0.76	+0.3
6,162,892	-		PFLU_RS27685	0.76	-1.8
6,162,907	+		PFLU_RS27685	0.77	-2.7
6,162,907	+		PFLU_RS27685	0.77	+0.1
6,162,907	+		PFLU_RS27685	0.77	-0.5
6,162,907	+		PFLU_RS27685	0.77	+0.7
6,162,907	+		PFLU_RS27685	0.77	-1.7
6,162,907	+		PFLU_RS27685	0.77	-1.6
6,162,907	+		PFLU_RS27685	0.77	+0.1
6,162,908	-		PFLU_RS27685	0.77	-2.2
6,162,908	-		PFLU_RS27685	0.77	-1.8
6,162,908	-		PFLU_RS27685	0.77	+1.0
6,162,908	-		PFLU_RS27685	0.77	-0.2
6,162,908	-		PFLU_RS27685	0.77	+0.7
6,162,908	-		PFLU_RS27685	0.77	-2.7
6,162,908	-		PFLU_RS27685	0.77	-0.6
6,162,908	-		PFLU_RS27685	0.77	-1.0
6,163,050	+		PFLU_RS27685	0.83	-0.7
6,163,050	+		PFLU_RS27685	0.83	+0.3
6,163,050	+		PFLU_RS27685	0.83	+1.3
6,163,051	-		PFLU_RS27685	0.83	-1.4
6,163,051	-		PFLU_RS27685	0.83	-3.2
6,163,057	+		PFLU_RS27685	0.84	-1.5
6,163,057	+		PFLU_RS27685	0.84	-2.3
6,163,058	-		PFLU_RS27685	0.84	-2.2
6,163,058	-		PFLU_RS27685	0.84	-0.9
6,163,058	-		PFLU_RS27685	0.84	-2.2
6,163,058	-		PFLU_RS27685	0.84	+0.4
6,163,093	+		PFLU_RS27685	0.85	-1.1
6,163,263	+				-2.1
6,163,335	-				+1.3
6,163,335	-				+2.1
6,163,346	+				-1.1
6,163,354	-				-0.0
6,163,354	-				-2.3
6,163,355	+				+0.3
6,163,356	-				-1.2
6,163,356	-				-2.5
6,163,397	+				-1.7
6,163,410	+				-0.4
6,163,410	+				+1.6
6,163,411	-				-1.3
6,163,411	-				+1.2
6,163,411	-				-0.9
6,163,411	-				+0.1
6,163,411	-				+0.4
6,163,411	-				+1.4
6,163,504	+				-0.6
6,163,504	+				-0.2
6,163,504	+				-1.8
6,163,504	+				+1.6
6,163,504	+				+1.3
6,163,504	+				-0.0
6,163,504	+				-0.7
6,163,504	+				-0.6
6,163,504	+				-1.8
6,163,504	+				+0.5
6,163,504	+				-2.5
6,163,504	+				+0.8
6,163,504	+				+0.1
6,163,504	+				+1.7
6,163,504	+				+2.0
6,163,504	+				-1.0
6,163,504	+				-2.7
6,163,505	-				-1.9
6,163,505	-				+1.0
6,163,505	-				-0.1
6,163,505	-				-0.2
6,163,505	-				-0.7
6,163,505	-				-0.2
6,163,505	-				+0.5
6,163,505	-				+1.0
6,163,505	-				-1.5
6,163,505	-				+0.5
6,163,505	-				+1.0
6,163,505	-				-1.5
6,163,505	-				-2.9
6,163,505	-				-1.3
6,163,505	-				+1.5
6,163,507	+				+0.7
6,163,507	+				+1.5
6,163,507	+				+0.0
6,163,507	+				-0.6
6,163,508	-				+0.4
6,163,508	-				+0.7
6,163,508	-				+0.9
6,163,557	+				-1.0
6,163,557	+				+0.8
6,163,557	+				+1.9
6,163,557	+				-0.9
6,163,557	+				+0.3
6,163,557	+				-2.0
6,163,557	+				-1.5
6,163,557	+				-1.3
6,163,558	-				+1.5
6,163,558	-				-0.6
6,163,558	-				-1.0
6,163,558	-				+1.9
6,163,558	-				+1.4
6,163,558	-				-0.2
6,163,558	-				-1.3
6,163,558	-				+1.4
6,163,558	-				-1.1
6,163,558	-				+0.8
6,163,559	+				-2.3
6,163,559	+				+1.4
6,163,559	+				-0.9
6,163,559	+				+1.1
6,163,559	+				-0.9
6,163,559	+				-0.0
6,163,559	+				-0.6
6,163,559	+				-2.4
6,163,559	+				+1.1
6,163,559	+				+0.6
6,163,559	+				+0.8
6,163,559	+				-0.7
6,163,560	-				+0.3
6,163,560	-				+0.9
6,163,560	-				-0.1
6,163,560	-				+0.8
6,163,560	-				-0.8
6,163,560	-				+1.7
6,163,561	+				+0.8
6,163,561	+				-0.0
6,163,561	+				-0.4
6,163,561	+				+0.9
6,163,561	+				-4.0
6,163,561	+				+2.4
6,163,561	+				+1.3
6,163,561	+				+1.0
6,163,561	+				-1.0
6,163,561	+				+1.0
6,163,561	+				-0.7
6,163,561	+				+2.3
6,163,561	+				+2.1
6,163,561	+				-1.0
6,163,561	+				-2.1
6,163,561	+				+1.3
6,163,561	+				-0.4
6,163,561	+				-1.2
6,163,561	+				+0.6
6,163,561	+				-0.6
6,163,561	+				+0.3
6,163,561	+				+0.0
6,163,561	+				+1.2
6,163,561	+				-0.1
6,163,561	+				+0.8
6,163,561	+				-2.1
6,163,561	+				+1.2
6,163,561	+				+0.8
6,163,561	+				+0.4
6,163,561	+				-0.0
6,163,561	+				-2.0
6,163,561	+				-1.5
6,163,562	-				+0.3
6,163,562	-				-2.0
6,163,562	-				+0.8
6,163,562	-				+2.7
6,163,562	-				-2.6
6,163,562	-				-0.7
6,163,562	-				+1.5
6,163,562	-				-0.2
6,163,562	-				-1.5
6,163,562	-				-0.4
6,163,562	-				+1.0
6,163,562	-				-2.6
6,163,562	-				+0.9
6,163,562	-				-0.5
6,163,562	-				-2.7
6,163,562	-				+1.4
6,163,562	-				-0.8
6,163,562	-				-1.2
6,163,933	+		PFLU_RS27690	0.81	-1.2
6,163,933	+		PFLU_RS27690	0.81	+0.8
6,163,948	+		PFLU_RS27690	0.84	-2.7
6,163,948	+		PFLU_RS27690	0.84	-1.3
6,164,004	+				-1.9
6,164,005	-				-1.9
6,164,019	+				+0.5
6,164,019	+				-0.2
6,164,019	+				+1.2
6,164,019	+				-0.4
6,164,019	+				-1.7
6,164,019	+				-1.3
6,164,019	+				+2.9
6,164,019	+				+1.3
6,164,019	+				+0.4
6,164,019	+				-2.5
6,164,019	+				-3.0
6,164,019	+				+2.4
6,164,019	+				-0.1
6,164,019	+				+1.6
6,164,019	+				+1.1
6,164,020	-				+1.3
6,164,020	-				-1.7
6,164,020	-				+0.6
6,164,020	-				+1.7
6,164,020	-				-1.8
6,164,020	-				-1.8
6,164,020	-				-2.0
6,164,020	-				+0.6
6,164,020	-				+0.2
6,164,020	-				+0.4
6,164,020	-				-0.0
6,164,020	-				-2.0
6,164,020	-				+0.6
6,164,112	-				-2.3
6,164,123	+				-0.6
6,164,123	+				+1.5
6,164,124	-				-1.2
6,164,124	-				-0.4
6,164,124	-				-0.2
6,164,147	+				+1.2
6,164,147	+				-1.1
6,164,147	+				+0.3
6,164,148	-				-2.0
6,164,148	-				-0.6
6,164,148	-				+0.4
6,164,161	-				-3.0
6,164,185	+				+0.4
6,164,185	+				-2.7
6,164,185	+				-1.9
6,164,185	+				-3.1
6,164,185	+				+0.0
6,164,186	-				+0.1
6,164,186	-				-3.0
6,164,191	+				+0.5
6,164,191	+				-1.3
6,164,191	+				+0.3
6,164,191	+				-1.6
6,164,191	+				+1.4
6,164,191	+				-0.7
6,164,191	+				-1.5
6,164,191	+				-0.9
6,164,192	-				-1.5
6,164,192	-				+1.4
6,164,192	-				-1.7
6,164,192	-				+1.4
6,164,192	-				+0.7
6,164,192	-				+0.4
6,164,192	-				-0.6
6,164,265	+				-0.8
6,164,265	+				-1.1
6,164,265	+				-0.6
6,164,265	+				-0.7
6,164,265	+				+1.5
6,164,265	+				+1.5
6,164,265	+				-1.9
6,164,266	-				-0.9
6,164,266	-				+0.8
6,164,266	-				-2.3
6,164,266	-				-2.2
6,164,266	-				-1.5
6,164,266	-				+0.8
6,164,266	-				+1.2
6,164,266	-				-1.0
6,164,266	-				-0.0
6,164,266	-				-1.6
6,164,271	+				+1.8
6,164,271	+				-0.0
6,164,271	+				+1.0
6,164,271	+				+1.3
6,164,271	+				-0.3
6,164,271	+				-0.9
6,164,271	+				+1.8
6,164,272	-				+0.3
6,164,272	-				-2.1
6,164,272	-				-2.4
6,164,411	+				+0.8
6,164,411	+				+0.8
6,164,411	+				+1.3
6,164,411	+				+0.8
6,164,411	+				-0.6
6,164,411	+				+0.4
6,164,411	+				-2.2
6,164,412	-				+0.7
6,164,412	-				+0.4
6,164,412	-				-0.7
6,164,412	-				-2.2
6,164,412	-				-1.4
6,164,412	-				+0.6
6,164,412	-				-1.3
6,164,412	-				-2.2
6,164,419	+				-0.3
6,164,419	+				+1.2
6,164,419	+				+0.7
6,164,419	+				+0.4
6,164,419	+				-2.9
6,164,419	+				+1.1
6,164,420	-				-2.7
6,164,420	-				+2.0
6,164,420	-				+0.6
6,164,420	-				+0.4
6,164,420	-				-1.9
6,164,420	-				-2.8
6,164,420	-				-0.9
6,164,420	-				-2.0
6,164,420	-				+1.4
6,164,420	-				-0.0
6,164,473	+		PFLU_RS27695	0.12	-1.3
6,164,473	+		PFLU_RS27695	0.12	-2.7
6,164,473	+		PFLU_RS27695	0.12	+0.5
6,164,473	+		PFLU_RS27695	0.12	+0.5
6,164,473	+		PFLU_RS27695	0.12	-0.2
6,164,473	+		PFLU_RS27695	0.12	-1.0
6,164,473	+		PFLU_RS27695	0.12	-1.0
6,164,474	-		PFLU_RS27695	0.13	-1.2
6,164,474	-		PFLU_RS27695	0.13	+1.4
6,164,474	-		PFLU_RS27695	0.13	-3.6
6,164,661	+		PFLU_RS27695	0.22	-2.0
6,164,782	+		PFLU_RS27695	0.28	+1.1
6,164,782	+		PFLU_RS27695	0.28	+1.2
6,164,782	+		PFLU_RS27695	0.28	-1.5
6,164,782	+		PFLU_RS27695	0.28	+1.1
6,164,782	+		PFLU_RS27695	0.28	+1.8
6,164,783	-		PFLU_RS27695	0.28	+0.5
6,164,783	-		PFLU_RS27695	0.28	+1.2
6,165,006	+		PFLU_RS27695	0.39	-0.7
6,165,006	+		PFLU_RS27695	0.39	+0.6
6,165,006	+		PFLU_RS27695	0.39	+0.3
6,165,006	+		PFLU_RS27695	0.39	+1.3
6,165,006	+		PFLU_RS27695	0.39	+0.5
6,165,006	+		PFLU_RS27695	0.39	+1.8
6,165,006	+		PFLU_RS27695	0.39	-2.2
6,165,007	-		PFLU_RS27695	0.40	-0.0
6,165,007	-		PFLU_RS27695	0.40	-1.8
6,165,007	-		PFLU_RS27695	0.40	-2.3
6,165,007	-		PFLU_RS27695	0.40	+0.2