Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS18450

Experiment: D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride
4,178,454	+		PFLU_RS18440	0.29	-1.0
4,178,454	+		PFLU_RS18440	0.29	+3.2
4,178,455	-		PFLU_RS18440	0.29	-0.1
4,178,455	-		PFLU_RS18440	0.29	+0.6
4,178,455	-		PFLU_RS18440	0.29	-2.7
4,178,455	-		PFLU_RS18440	0.29	-2.0
4,178,455	-		PFLU_RS18440	0.29	-1.1
4,178,541	+		PFLU_RS18440	0.43	-1.4
4,178,541	+		PFLU_RS18440	0.43	+0.2
4,178,542	-		PFLU_RS18440	0.44	-0.4
4,178,542	-		PFLU_RS18440	0.44	-1.1
4,178,542	-		PFLU_RS18440	0.44	-1.4
4,178,609	+		PFLU_RS18440	0.54	+0.2
4,178,610	-		PFLU_RS18440	0.55	-0.4
4,178,706	+		PFLU_RS18440	0.70	+0.8
4,178,729	+		PFLU_RS18440	0.74	-2.0
4,178,751	+		PFLU_RS18440	0.78	+0.4
4,178,751	+		PFLU_RS18440	0.78	+2.0
4,178,751	+		PFLU_RS18440	0.78	+1.1
4,178,752	-		PFLU_RS18440	0.78	+0.5
4,178,752	-		PFLU_RS18440	0.78	-1.5
4,178,886	+				-0.8
4,178,886	+				-0.4
4,178,886	+				+1.6
4,178,887	-				+1.5
4,178,887	-				+1.2
4,178,986	+		PFLU_RS18445	0.27	+1.2
4,178,986	+		PFLU_RS18445	0.27	+0.5
4,178,986	+		PFLU_RS18445	0.27	+3.2
4,178,989	+		PFLU_RS18445	0.28	+0.2
4,178,989	+		PFLU_RS18445	0.28	+0.6
4,178,989	+		PFLU_RS18445	0.28	+2.8
4,178,989	+		PFLU_RS18445	0.28	+1.2
4,178,989	+		PFLU_RS18445	0.28	-1.3
4,178,989	+		PFLU_RS18445	0.28	+1.8
4,178,989	+		PFLU_RS18445	0.28	+2.2
4,178,989	+		PFLU_RS18445	0.28	+0.2
4,178,990	-		PFLU_RS18445	0.28	+0.3
4,178,990	-		PFLU_RS18445	0.28	-2.4
4,178,990	-		PFLU_RS18445	0.28	+0.2
4,178,990	-		PFLU_RS18445	0.28	+2.0
4,178,990	-		PFLU_RS18445	0.28	-1.3
4,178,990	-		PFLU_RS18445	0.28	-0.1
4,178,990	-		PFLU_RS18445	0.28	-0.6
4,178,990	-		PFLU_RS18445	0.28	-2.2
4,178,990	-		PFLU_RS18445	0.28	-2.2
4,178,990	-		PFLU_RS18445	0.28	+0.2
4,178,990	-		PFLU_RS18445	0.28	+1.9
4,178,990	-		PFLU_RS18445	0.28	-0.4
4,178,990	-		PFLU_RS18445	0.28	-1.0
4,179,130	+		PFLU_RS18445	0.61	+0.3
4,179,131	-		PFLU_RS18445	0.62	-1.6
4,179,157	+		PFLU_RS18445	0.68	+1.4
4,179,158	-		PFLU_RS18445	0.68	+1.6
4,179,232	+		PFLU_RS18445	0.86	-0.6
4,179,232	+		PFLU_RS18445	0.86	+1.2
4,179,232	+		PFLU_RS18445	0.86	-2.9
4,179,232	+		PFLU_RS18445	0.86	+0.0
4,179,232	+		PFLU_RS18445	0.86	+2.1
4,179,232	+		PFLU_RS18445	0.86	+0.1
4,179,232	+		PFLU_RS18445	0.86	-0.4
4,179,232	+		PFLU_RS18445	0.86	-0.8
4,179,232	+		PFLU_RS18445	0.86	-0.3
4,179,232	+		PFLU_RS18445	0.86	-1.1
4,179,232	+		PFLU_RS18445	0.86	-1.6
4,179,232	+		PFLU_RS18445	0.86	+1.4
4,179,232	+		PFLU_RS18445	0.86	+1.1
4,179,232	+		PFLU_RS18445	0.86	-0.1
4,179,232	+		PFLU_RS18445	0.86	-0.1
4,179,232	+		PFLU_RS18445	0.86	-0.1
4,179,232	+		PFLU_RS18445	0.86	-2.3
4,179,232	+		PFLU_RS18445	0.86	-0.6
4,179,232	+		PFLU_RS18445	0.86	+1.1
4,179,232	+		PFLU_RS18445	0.86	-0.7
4,179,232	+		PFLU_RS18445	0.86	-0.5
4,179,232	+		PFLU_RS18445	0.86	+0.2
4,179,232	+		PFLU_RS18445	0.86	-1.1
4,179,232	+		PFLU_RS18445	0.86	+1.5
4,179,233	-		PFLU_RS18445	0.86	-0.8
4,179,233	-		PFLU_RS18445	0.86	+1.9
4,179,233	-		PFLU_RS18445	0.86	+2.3
4,179,233	-		PFLU_RS18445	0.86	+1.0
4,179,233	-		PFLU_RS18445	0.86	-0.9
4,179,233	-		PFLU_RS18445	0.86	-0.4
4,179,233	-		PFLU_RS18445	0.86	+0.0
4,179,233	-		PFLU_RS18445	0.86	-0.3
4,179,233	-		PFLU_RS18445	0.86	+0.4
4,179,233	-		PFLU_RS18445	0.86	+2.8
4,179,233	-		PFLU_RS18445	0.86	+1.2
4,179,233	-		PFLU_RS18445	0.86	-0.3
4,179,233	-		PFLU_RS18445	0.86	+3.5
4,179,233	-		PFLU_RS18445	0.86	-0.4
4,179,233	-		PFLU_RS18445	0.86	-0.1
4,179,233	-		PFLU_RS18445	0.86	+1.4
4,179,233	-		PFLU_RS18445	0.86	+1.6
4,179,233	-		PFLU_RS18445	0.86	+1.4
4,179,233	-		PFLU_RS18445	0.86	-0.6
4,179,233	-		PFLU_RS18445	0.86	+0.0
4,179,233	-		PFLU_RS18445	0.86	+0.2
4,179,233	-		PFLU_RS18445	0.86	-0.0
4,179,233	-		PFLU_RS18445	0.86	+0.8
4,179,233	-		PFLU_RS18445	0.86	+1.2
4,179,233	-		PFLU_RS18445	0.86	-0.6
4,179,236	+		PFLU_RS18445	0.87	-1.3
4,179,236	+		PFLU_RS18445	0.87	+0.2
4,179,236	+		PFLU_RS18445	0.87	-1.5
4,179,236	+		PFLU_RS18445	0.87	+0.0
4,179,236	+		PFLU_RS18445	0.87	+2.0
4,179,236	+		PFLU_RS18445	0.87	-1.3
4,179,236	+		PFLU_RS18445	0.87	+3.2
4,179,236	+		PFLU_RS18445	0.87	+0.6
4,179,236	+		PFLU_RS18445	0.87	+1.9
4,179,236	+		PFLU_RS18445	0.87	+0.0
4,179,236	+		PFLU_RS18445	0.87	-1.2
4,179,236	+		PFLU_RS18445	0.87	+1.2
4,179,236	+		PFLU_RS18445	0.87	-0.6
4,179,236	+		PFLU_RS18445	0.87	-1.0
4,179,236	+		PFLU_RS18445	0.87	+0.6
4,179,236	+		PFLU_RS18445	0.87	+2.0
4,179,236	+		PFLU_RS18445	0.87	+0.3
4,179,236	+		PFLU_RS18445	0.87	+0.9
4,179,236	+		PFLU_RS18445	0.87	+0.2
4,179,236	+		PFLU_RS18445	0.87	+1.7
4,179,236	+		PFLU_RS18445	0.87	+1.9
4,179,236	+		PFLU_RS18445	0.87	+2.5
4,179,236	+		PFLU_RS18445	0.87	+0.2
4,179,236	+		PFLU_RS18445	0.87	+1.6
4,179,236	+		PFLU_RS18445	0.87	+0.2
4,179,236	+		PFLU_RS18445	0.87	-0.8
4,179,237	-		PFLU_RS18445	0.87	-0.0
4,179,237	-		PFLU_RS18445	0.87	+3.3
4,179,237	-		PFLU_RS18445	0.87	+2.2
4,179,237	-		PFLU_RS18445	0.87	-1.0
4,179,237	-		PFLU_RS18445	0.87	-1.6
4,179,237	-		PFLU_RS18445	0.87	+0.3
4,179,237	-		PFLU_RS18445	0.87	-0.1
4,179,237	-		PFLU_RS18445	0.87	+2.2
4,179,237	-		PFLU_RS18445	0.87	+1.0
4,179,237	-		PFLU_RS18445	0.87	+0.6
4,179,237	-		PFLU_RS18445	0.87	+1.0
4,179,237	-		PFLU_RS18445	0.87	-1.0
4,179,237	-		PFLU_RS18445	0.87	-0.3
4,179,237	-		PFLU_RS18445	0.87	-2.3
4,179,237	-		PFLU_RS18445	0.87	-0.0
4,179,237	-		PFLU_RS18445	0.87	-0.8
4,179,237	-		PFLU_RS18445	0.87	-0.1
4,179,237	-		PFLU_RS18445	0.87	-0.9
4,179,237	-		PFLU_RS18445	0.87	+0.9
4,179,237	-		PFLU_RS18445	0.87	+1.2
4,179,237	-		PFLU_RS18445	0.87	+0.3
4,179,237	-		PFLU_RS18445	0.87	-2.4
4,179,397	+				+1.0
4,179,397	+				+1.5
4,179,397	+				+0.2
4,179,398	-				-1.5
4,179,398	-				+2.8
4,179,423	+				-1.7
4,179,423	+				+0.4
4,179,423	+				+0.9
4,179,424	-				+1.2
4,179,530	-		PFLU_RS18450	0.18	-0.8
4,179,586	+		PFLU_RS18450	0.27	-0.4
4,179,586	+		PFLU_RS18450	0.27	+0.6
4,179,586	+		PFLU_RS18450	0.27	-1.5
4,179,586	+		PFLU_RS18450	0.27	-1.0
4,179,586	+		PFLU_RS18450	0.27	+1.6
4,179,586	+		PFLU_RS18450	0.27	-2.1
4,179,587	-		PFLU_RS18450	0.27	+0.0
4,179,587	-		PFLU_RS18450	0.27	-0.6
4,179,587	-		PFLU_RS18450	0.27	-0.6
4,179,587	-		PFLU_RS18450	0.27	-1.1
4,179,587	-		PFLU_RS18450	0.27	-1.0
4,179,657	+		PFLU_RS18450	0.37	+2.4
4,179,657	+		PFLU_RS18450	0.37	-0.5
4,179,657	+		PFLU_RS18450	0.37	-2.3
4,179,658	-		PFLU_RS18450	0.37	-1.0
4,179,658	-		PFLU_RS18450	0.37	+3.3
4,179,955	-		PFLU_RS18450	0.82	+0.4
4,180,050	+				-1.4
4,180,050	+				-1.8
4,180,050	+				-0.0
4,180,051	-				-0.1
4,180,051	-				+1.8
4,180,051	-				-1.1
4,180,068	+				-2.3
4,180,069	-				+3.2
4,180,423	+		PFLU_RS18455	0.34	+1.4
4,180,423	+		PFLU_RS18455	0.34	+1.5
4,180,423	+		PFLU_RS18455	0.34	+1.4
4,180,424	-		PFLU_RS18455	0.34	+0.4
4,180,481	+		PFLU_RS18455	0.41	+1.0
4,180,481	+		PFLU_RS18455	0.41	-1.0
4,180,482	-		PFLU_RS18455	0.41	+1.3
4,180,591	+		PFLU_RS18455	0.54	-1.6
4,180,591	+		PFLU_RS18455	0.54	-1.0
4,180,591	+		PFLU_RS18455	0.54	-1.5
4,180,591	+		PFLU_RS18455	0.54	+0.2
4,180,591	+		PFLU_RS18455	0.54	-0.3
4,180,591	+		PFLU_RS18455	0.54	-2.0
4,180,592	-		PFLU_RS18455	0.54	-0.6
4,180,592	-		PFLU_RS18455	0.54	+1.2
4,180,592	-		PFLU_RS18455	0.54	-3.1
4,180,592	-		PFLU_RS18455	0.54	-0.4
4,180,592	-		PFLU_RS18455	0.54	-0.4
4,180,592	-		PFLU_RS18455	0.54	-2.4
4,180,592	-		PFLU_RS18455	0.54	-0.6
4,180,669	+		PFLU_RS18455	0.63	-1.0
4,180,669	+		PFLU_RS18455	0.63	-1.6
4,180,669	+		PFLU_RS18455	0.63	-0.6
4,180,669	+		PFLU_RS18455	0.63	+0.9
4,180,669	+		PFLU_RS18455	0.63	-1.3
4,180,669	+		PFLU_RS18455	0.63	-2.2
4,180,669	+		PFLU_RS18455	0.63	-1.1
4,180,669	+		PFLU_RS18455	0.63	-0.4
4,180,669	+		PFLU_RS18455	0.63	+2.2
4,180,670	-		PFLU_RS18455	0.64	-1.4
4,180,670	-		PFLU_RS18455	0.64	-1.7
4,180,670	-		PFLU_RS18455	0.64	+0.5
4,180,670	-		PFLU_RS18455	0.64	+0.5
4,180,670	-		PFLU_RS18455	0.64	-0.4
4,180,670	-		PFLU_RS18455	0.64	+0.7
4,180,670	-		PFLU_RS18455	0.64	-2.0
4,180,670	-		PFLU_RS18455	0.64	-0.1
4,180,670	-		PFLU_RS18455	0.64	-2.1
4,180,693	+		PFLU_RS18455	0.66	+0.4
4,180,693	+		PFLU_RS18455	0.66	-0.9
4,180,718	-		PFLU_RS18455	0.69	+1.2
4,180,732	+		PFLU_RS18455	0.71	+0.4
4,180,732	+		PFLU_RS18455	0.71	-0.6
4,180,732	+		PFLU_RS18455	0.71	+1.0
4,180,732	+		PFLU_RS18455	0.71	-1.6
4,180,732	+		PFLU_RS18455	0.71	-1.5
4,180,732	+		PFLU_RS18455	0.71	-0.7
4,180,732	+		PFLU_RS18455	0.71	-2.5
4,180,733	-		PFLU_RS18455	0.71	+1.5
4,180,733	-		PFLU_RS18455	0.71	+1.1
4,180,733	-		PFLU_RS18455	0.71	+4.2
4,180,733	-		PFLU_RS18455	0.71	-1.1
4,180,733	-		PFLU_RS18455	0.71	-2.3
4,180,733	-		PFLU_RS18455	0.71	-1.6
4,180,733	-		PFLU_RS18455	0.71	-3.0
4,180,733	-		PFLU_RS18455	0.71	-1.9
4,180,733	-		PFLU_RS18455	0.71	+0.6
4,180,733	-		PFLU_RS18455	0.71	+0.6
4,180,733	-		PFLU_RS18455	0.71	-0.8
4,180,733	-		PFLU_RS18455	0.71	-1.0
4,180,834	+		PFLU_RS18455	0.83	+1.8
4,180,834	+		PFLU_RS18455	0.83	-1.0
4,180,834	+		PFLU_RS18455	0.83	+0.8
4,180,834	+		PFLU_RS18455	0.83	-1.3
4,180,834	+		PFLU_RS18455	0.83	+0.2
4,180,834	+		PFLU_RS18455	0.83	-1.7
4,180,834	+		PFLU_RS18455	0.83	+0.2
4,180,834	+		PFLU_RS18455	0.83	+0.6
4,180,834	+		PFLU_RS18455	0.83	+1.0
4,180,834	+		PFLU_RS18455	0.83	-1.3
4,180,834	+		PFLU_RS18455	0.83	+1.0
4,180,834	+		PFLU_RS18455	0.83	-1.5
4,180,835	-		PFLU_RS18455	0.84	+0.4
4,180,835	-		PFLU_RS18455	0.84	-0.3
4,180,835	-		PFLU_RS18455	0.84	-1.6
4,180,835	-		PFLU_RS18455	0.84	+2.4
4,180,835	-		PFLU_RS18455	0.84	-0.1
4,180,835	-		PFLU_RS18455	0.84	+1.3
4,180,835	-		PFLU_RS18455	0.84	+0.6
4,180,835	-		PFLU_RS18455	0.84	+0.3
4,180,835	-		PFLU_RS18455	0.84	+0.6
4,180,835	-		PFLU_RS18455	0.84	-0.4
4,180,835	-		PFLU_RS18455	0.84	+1.2
4,180,835	-		PFLU_RS18455	0.84	+0.0
4,180,835	-		PFLU_RS18455	0.84	+0.3
4,180,835	-		PFLU_RS18455	0.84	-1.6
4,180,835	-		PFLU_RS18455	0.84	+0.2
4,180,835	-		PFLU_RS18455	0.84	+2.0
4,180,889	+				-1.7
4,180,889	+				+2.4
4,180,889	+				-1.1
4,180,889	+				-0.4
4,180,890	-				+0.5
4,180,890	-				-0.7
4,180,890	-				-2.7
4,180,890	-				+0.2
4,180,958	+				-1.1
4,180,958	+				+0.3
4,180,958	+				-0.3
4,180,958	+				+1.3
4,180,958	+				-2.7
4,180,959	-				-1.1
4,180,959	-				-1.1
4,180,959	-				-0.6
4,180,959	-				-1.3
4,180,959	-				-0.1
4,180,959	-				-0.6
4,180,959	-				+1.3
4,181,011	+				-1.4
4,181,016	+				-0.8
4,181,016	+				-2.8
4,181,017	-				+1.3
4,181,017	-				+2.3
4,181,017	-				-1.3
4,181,017	-				-1.1
4,181,017	-				+0.6
4,181,017	-				+2.3