Experiment: D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS18185 and PFLU_RS18190 are separated by 17 nucleotides PFLU_RS18190 and PFLU_RS18195 are separated by 62 nucleotides PFLU_RS18195 and PFLU_RS18200 are separated by 21 nucleotides PFLU_RS18200 and PFLU_RS18205 are separated by 44 nucleotides
PFLU_RS18185: PFLU_RS18185 - SDR family oxidoreductase, at 4,127,420 to 4,128,184
_RS18185
PFLU_RS18190: PFLU_RS18190 - SDR family oxidoreductase, at 4,128,202 to 4,129,002
_RS18190
PFLU_RS18195: PFLU_RS18195 - sugar-binding transcriptional regulator, at 4,129,065 to 4,130,018
_RS18195
PFLU_RS18200: PFLU_RS18200 - transaldolase, at 4,130,040 to 4,130,963
_RS18200
PFLU_RS18205: PFLU_RS18205 - aquaporin Z, at 4,131,008 to 4,131,721
_RS18205
Position (kb) 4129
4130
4131 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4128.222 kb on + strand at 4128.364 kb on + strand, within PFLU_RS18190 at 4128.364 kb on + strand, within PFLU_RS18190 at 4128.364 kb on + strand, within PFLU_RS18190 at 4128.364 kb on + strand, within PFLU_RS18190 at 4128.364 kb on + strand, within PFLU_RS18190 at 4128.364 kb on + strand, within PFLU_RS18190 at 4128.365 kb on - strand, within PFLU_RS18190 at 4128.365 kb on - strand, within PFLU_RS18190 at 4128.365 kb on - strand, within PFLU_RS18190 at 4128.371 kb on + strand, within PFLU_RS18190 at 4128.371 kb on + strand, within PFLU_RS18190 at 4128.371 kb on + strand, within PFLU_RS18190 at 4128.371 kb on + strand, within PFLU_RS18190 at 4128.371 kb on + strand, within PFLU_RS18190 at 4128.372 kb on - strand, within PFLU_RS18190 at 4128.372 kb on - strand, within PFLU_RS18190 at 4128.372 kb on - strand, within PFLU_RS18190 at 4128.372 kb on - strand, within PFLU_RS18190 at 4128.503 kb on - strand, within PFLU_RS18190 at 4128.589 kb on + strand, within PFLU_RS18190 at 4128.589 kb on + strand, within PFLU_RS18190 at 4128.589 kb on + strand, within PFLU_RS18190 at 4128.589 kb on + strand, within PFLU_RS18190 at 4128.589 kb on + strand, within PFLU_RS18190 at 4128.589 kb on + strand, within PFLU_RS18190 at 4128.589 kb on + strand, within PFLU_RS18190 at 4128.589 kb on + strand, within PFLU_RS18190 at 4128.589 kb on + strand, within PFLU_RS18190 at 4128.589 kb on + strand, within PFLU_RS18190 at 4128.590 kb on - strand, within PFLU_RS18190 at 4128.590 kb on - strand, within PFLU_RS18190 at 4128.590 kb on - strand, within PFLU_RS18190 at 4128.590 kb on - strand, within PFLU_RS18190 at 4128.590 kb on - strand, within PFLU_RS18190 at 4128.590 kb on - strand, within PFLU_RS18190 at 4128.590 kb on - strand, within PFLU_RS18190 at 4128.590 kb on - strand, within PFLU_RS18190 at 4128.590 kb on - strand, within PFLU_RS18190 at 4128.590 kb on - strand, within PFLU_RS18190 at 4128.590 kb on - strand, within PFLU_RS18190 at 4128.590 kb on - strand, within PFLU_RS18190 at 4128.624 kb on + strand, within PFLU_RS18190 at 4128.624 kb on + strand, within PFLU_RS18190 at 4128.624 kb on + strand, within PFLU_RS18190 at 4128.624 kb on + strand, within PFLU_RS18190 at 4128.624 kb on + strand, within PFLU_RS18190 at 4128.625 kb on - strand, within PFLU_RS18190 at 4128.658 kb on + strand, within PFLU_RS18190 at 4128.659 kb on - strand, within PFLU_RS18190 at 4128.659 kb on - strand, within PFLU_RS18190 at 4128.659 kb on - strand, within PFLU_RS18190 at 4128.670 kb on + strand, within PFLU_RS18190 at 4128.735 kb on + strand, within PFLU_RS18190 at 4128.736 kb on - strand, within PFLU_RS18190 at 4128.736 kb on - strand, within PFLU_RS18190 at 4128.790 kb on + strand, within PFLU_RS18190 at 4128.790 kb on + strand, within PFLU_RS18190 at 4128.790 kb on + strand, within PFLU_RS18190 at 4128.791 kb on - strand, within PFLU_RS18190 at 4128.838 kb on + strand, within PFLU_RS18190 at 4128.952 kb on + strand at 4128.952 kb on + strand at 4129.001 kb on - strand at 4129.001 kb on - strand at 4129.001 kb on - strand at 4129.040 kb on + strand at 4129.040 kb on + strand at 4129.040 kb on + strand at 4129.040 kb on + strand at 4129.043 kb on + strand at 4129.043 kb on + strand at 4129.044 kb on - strand at 4129.044 kb on - strand at 4129.044 kb on - strand at 4129.045 kb on + strand at 4129.045 kb on + strand at 4129.046 kb on - strand at 4129.046 kb on - strand at 4129.046 kb on - strand at 4129.046 kb on - strand at 4129.046 kb on - strand at 4129.113 kb on + strand at 4129.113 kb on + strand at 4129.113 kb on + strand at 4129.116 kb on + strand at 4129.282 kb on - strand, within PFLU_RS18195 at 4129.289 kb on - strand, within PFLU_RS18195 at 4129.289 kb on - strand, within PFLU_RS18195 at 4129.371 kb on + strand, within PFLU_RS18195 at 4129.372 kb on - strand, within PFLU_RS18195 at 4129.409 kb on + strand, within PFLU_RS18195 at 4129.410 kb on - strand, within PFLU_RS18195 at 4129.410 kb on - strand, within PFLU_RS18195 at 4129.410 kb on - strand, within PFLU_RS18195 at 4129.492 kb on + strand, within PFLU_RS18195 at 4129.492 kb on + strand, within PFLU_RS18195 at 4129.492 kb on + strand, within PFLU_RS18195 at 4129.492 kb on + strand, within PFLU_RS18195 at 4129.492 kb on + strand, within PFLU_RS18195 at 4129.492 kb on + strand, within PFLU_RS18195 at 4129.492 kb on + strand, within PFLU_RS18195 at 4129.493 kb on - strand, within PFLU_RS18195 at 4129.493 kb on - strand, within PFLU_RS18195 at 4129.493 kb on - strand, within PFLU_RS18195 at 4129.493 kb on - strand, within PFLU_RS18195 at 4129.493 kb on - strand, within PFLU_RS18195 at 4129.493 kb on - strand, within PFLU_RS18195 at 4129.493 kb on - strand, within PFLU_RS18195 at 4129.742 kb on + strand, within PFLU_RS18195 at 4129.746 kb on + strand, within PFLU_RS18195 at 4129.746 kb on + strand, within PFLU_RS18195 at 4129.746 kb on + strand, within PFLU_RS18195 at 4129.746 kb on + strand, within PFLU_RS18195 at 4129.746 kb on + strand, within PFLU_RS18195 at 4129.746 kb on + strand, within PFLU_RS18195 at 4129.746 kb on + strand, within PFLU_RS18195 at 4129.746 kb on + strand, within PFLU_RS18195 at 4129.746 kb on + strand, within PFLU_RS18195 at 4129.747 kb on - strand, within PFLU_RS18195 at 4129.747 kb on - strand, within PFLU_RS18195 at 4129.747 kb on - strand, within PFLU_RS18195 at 4129.747 kb on - strand, within PFLU_RS18195 at 4129.747 kb on - strand, within PFLU_RS18195 at 4129.747 kb on - strand, within PFLU_RS18195 at 4129.747 kb on - strand, within PFLU_RS18195 at 4129.747 kb on - strand, within PFLU_RS18195 at 4129.747 kb on - strand, within PFLU_RS18195 at 4129.747 kb on - strand, within PFLU_RS18195 at 4129.747 kb on - strand, within PFLU_RS18195 at 4129.747 kb on - strand, within PFLU_RS18195 at 4129.749 kb on + strand, within PFLU_RS18195 at 4129.749 kb on + strand, within PFLU_RS18195 at 4129.750 kb on - strand, within PFLU_RS18195 at 4129.750 kb on - strand, within PFLU_RS18195 at 4129.750 kb on - strand, within PFLU_RS18195 at 4129.812 kb on + strand, within PFLU_RS18195 at 4129.812 kb on + strand, within PFLU_RS18195 at 4129.813 kb on - strand, within PFLU_RS18195 at 4129.813 kb on - strand, within PFLU_RS18195 at 4130.016 kb on + strand at 4130.017 kb on - strand at 4130.182 kb on - strand, within PFLU_RS18200 at 4130.182 kb on - strand, within PFLU_RS18200 at 4130.182 kb on - strand, within PFLU_RS18200 at 4130.276 kb on + strand, within PFLU_RS18200 at 4130.276 kb on + strand, within PFLU_RS18200 at 4130.373 kb on + strand, within PFLU_RS18200 at 4130.373 kb on + strand, within PFLU_RS18200 at 4130.373 kb on + strand, within PFLU_RS18200 at 4130.374 kb on - strand, within PFLU_RS18200 at 4130.565 kb on + strand, within PFLU_RS18200 at 4130.565 kb on + strand, within PFLU_RS18200 at 4130.565 kb on + strand, within PFLU_RS18200 at 4130.565 kb on + strand, within PFLU_RS18200 at 4130.566 kb on - strand, within PFLU_RS18200 at 4130.566 kb on - strand, within PFLU_RS18200 at 4130.566 kb on - strand, within PFLU_RS18200 at 4130.566 kb on - strand, within PFLU_RS18200 at 4130.566 kb on - strand, within PFLU_RS18200 at 4130.566 kb on - strand, within PFLU_RS18200 at 4130.566 kb on - strand, within PFLU_RS18200 at 4130.566 kb on - strand, within PFLU_RS18200 at 4130.598 kb on + strand, within PFLU_RS18200 at 4130.599 kb on - strand, within PFLU_RS18200 at 4130.643 kb on + strand, within PFLU_RS18200 at 4130.643 kb on + strand, within PFLU_RS18200 at 4130.643 kb on + strand, within PFLU_RS18200 at 4130.643 kb on + strand, within PFLU_RS18200 at 4130.644 kb on - strand, within PFLU_RS18200 at 4130.644 kb on - strand, within PFLU_RS18200 at 4130.644 kb on - strand, within PFLU_RS18200 at 4130.649 kb on + strand, within PFLU_RS18200 at 4130.649 kb on + strand, within PFLU_RS18200 at 4130.649 kb on + strand, within PFLU_RS18200 at 4130.650 kb on - strand, within PFLU_RS18200 at 4130.650 kb on - strand, within PFLU_RS18200 at 4130.650 kb on - strand, within PFLU_RS18200 at 4130.650 kb on - strand, within PFLU_RS18200 at 4130.650 kb on - strand, within PFLU_RS18200 at 4130.650 kb on - strand, within PFLU_RS18200 at 4130.650 kb on - strand, within PFLU_RS18200 at 4130.652 kb on + strand, within PFLU_RS18200 at 4130.652 kb on + strand, within PFLU_RS18200 at 4130.652 kb on + strand, within PFLU_RS18200 at 4130.652 kb on + strand, within PFLU_RS18200 at 4130.652 kb on + strand, within PFLU_RS18200 at 4130.652 kb on + strand, within PFLU_RS18200 at 4130.653 kb on - strand, within PFLU_RS18200 at 4130.653 kb on - strand, within PFLU_RS18200 at 4130.653 kb on - strand, within PFLU_RS18200 at 4130.653 kb on - strand, within PFLU_RS18200 at 4130.653 kb on - strand, within PFLU_RS18200 at 4130.653 kb on - strand, within PFLU_RS18200 at 4130.653 kb on - strand, within PFLU_RS18200 at 4130.961 kb on + strand at 4130.961 kb on + strand at 4130.961 kb on + strand at 4130.961 kb on + strand at 4130.962 kb on - strand at 4130.962 kb on - strand at 4130.962 kb on - strand at 4130.962 kb on - strand at 4130.962 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride remove 4,128,222 + +0.1 4,128,364 + PFLU_RS18190 0.20 -1.1 4,128,364 + PFLU_RS18190 0.20 +0.0 4,128,364 + PFLU_RS18190 0.20 +0.1 4,128,364 + PFLU_RS18190 0.20 +0.4 4,128,364 + PFLU_RS18190 0.20 -2.5 4,128,364 + PFLU_RS18190 0.20 -1.3 4,128,365 - PFLU_RS18190 0.20 -1.2 4,128,365 - PFLU_RS18190 0.20 +0.1 4,128,365 - PFLU_RS18190 0.20 -2.8 4,128,371 + PFLU_RS18190 0.21 -1.2 4,128,371 + PFLU_RS18190 0.21 -0.5 4,128,371 + PFLU_RS18190 0.21 -0.9 4,128,371 + PFLU_RS18190 0.21 +0.1 4,128,371 + PFLU_RS18190 0.21 +2.1 4,128,372 - PFLU_RS18190 0.21 +0.8 4,128,372 - PFLU_RS18190 0.21 -0.1 4,128,372 - PFLU_RS18190 0.21 -0.2 4,128,372 - PFLU_RS18190 0.21 -0.3 4,128,503 - PFLU_RS18190 0.38 +0.3 4,128,589 + PFLU_RS18190 0.48 -0.5 4,128,589 + PFLU_RS18190 0.48 +1.5 4,128,589 + PFLU_RS18190 0.48 +1.1 4,128,589 + PFLU_RS18190 0.48 -0.3 4,128,589 + PFLU_RS18190 0.48 -0.3 4,128,589 + PFLU_RS18190 0.48 +2.7 4,128,589 + PFLU_RS18190 0.48 +0.5 4,128,589 + PFLU_RS18190 0.48 +0.9 4,128,589 + PFLU_RS18190 0.48 +1.3 4,128,589 + PFLU_RS18190 0.48 -2.0 4,128,590 - PFLU_RS18190 0.48 +1.6 4,128,590 - PFLU_RS18190 0.48 -0.1 4,128,590 - PFLU_RS18190 0.48 +1.7 4,128,590 - PFLU_RS18190 0.48 +0.5 4,128,590 - PFLU_RS18190 0.48 -1.3 4,128,590 - PFLU_RS18190 0.48 -0.2 4,128,590 - PFLU_RS18190 0.48 +2.1 4,128,590 - PFLU_RS18190 0.48 -0.2 4,128,590 - PFLU_RS18190 0.48 -1.4 4,128,590 - PFLU_RS18190 0.48 +2.5 4,128,590 - PFLU_RS18190 0.48 -0.3 4,128,590 - PFLU_RS18190 0.48 +0.1 4,128,624 + PFLU_RS18190 0.53 +0.7 4,128,624 + PFLU_RS18190 0.53 -0.1 4,128,624 + PFLU_RS18190 0.53 -0.9 4,128,624 + PFLU_RS18190 0.53 +0.8 4,128,624 + PFLU_RS18190 0.53 +0.8 4,128,625 - PFLU_RS18190 0.53 +0.4 4,128,658 + PFLU_RS18190 0.57 -0.1 4,128,659 - PFLU_RS18190 0.57 +0.7 4,128,659 - PFLU_RS18190 0.57 -0.7 4,128,659 - PFLU_RS18190 0.57 +1.3 4,128,670 + PFLU_RS18190 0.58 +0.6 4,128,735 + PFLU_RS18190 0.67 -1.5 4,128,736 - PFLU_RS18190 0.67 -1.5 4,128,736 - PFLU_RS18190 0.67 -2.6 4,128,790 + PFLU_RS18190 0.73 +0.7 4,128,790 + PFLU_RS18190 0.73 -0.9 4,128,790 + PFLU_RS18190 0.73 +3.0 4,128,791 - PFLU_RS18190 0.74 -1.2 4,128,838 + PFLU_RS18190 0.79 -2.1 4,128,952 + +2.1 4,128,952 + +1.0 4,129,001 - -1.1 4,129,001 - -1.3 4,129,001 - -1.2 4,129,040 + -0.0 4,129,040 + +0.3 4,129,040 + -0.5 4,129,040 + -1.2 4,129,043 + -0.2 4,129,043 + +1.4 4,129,044 - +0.1 4,129,044 - -2.3 4,129,044 - -1.3 4,129,045 + -2.3 4,129,045 + -1.5 4,129,046 - -0.6 4,129,046 - -0.1 4,129,046 - +1.1 4,129,046 - +1.2 4,129,046 - +1.1 4,129,113 + +1.2 4,129,113 + -2.1 4,129,113 + -1.3 4,129,116 + -2.8 4,129,282 - PFLU_RS18195 0.23 -2.2 4,129,289 - PFLU_RS18195 0.23 -2.1 4,129,289 - PFLU_RS18195 0.23 -1.5 4,129,371 + PFLU_RS18195 0.32 -1.3 4,129,372 - PFLU_RS18195 0.32 -1.8 4,129,409 + PFLU_RS18195 0.36 +0.4 4,129,410 - PFLU_RS18195 0.36 -1.5 4,129,410 - PFLU_RS18195 0.36 -2.3 4,129,410 - PFLU_RS18195 0.36 -2.3 4,129,492 + PFLU_RS18195 0.45 -0.7 4,129,492 + PFLU_RS18195 0.45 -1.5 4,129,492 + PFLU_RS18195 0.45 -0.5 4,129,492 + PFLU_RS18195 0.45 -0.5 4,129,492 + PFLU_RS18195 0.45 -0.3 4,129,492 + PFLU_RS18195 0.45 -2.1 4,129,492 + PFLU_RS18195 0.45 +0.1 4,129,493 - PFLU_RS18195 0.45 -1.3 4,129,493 - PFLU_RS18195 0.45 -3.1 4,129,493 - PFLU_RS18195 0.45 +0.1 4,129,493 - PFLU_RS18195 0.45 -1.3 4,129,493 - PFLU_RS18195 0.45 -2.3 4,129,493 - PFLU_RS18195 0.45 -0.6 4,129,493 - PFLU_RS18195 0.45 -2.1 4,129,742 + PFLU_RS18195 0.71 +1.1 4,129,746 + PFLU_RS18195 0.71 -1.7 4,129,746 + PFLU_RS18195 0.71 -0.9 4,129,746 + PFLU_RS18195 0.71 +1.1 4,129,746 + PFLU_RS18195 0.71 -2.7 4,129,746 + PFLU_RS18195 0.71 -1.6 4,129,746 + PFLU_RS18195 0.71 -0.5 4,129,746 + PFLU_RS18195 0.71 -0.9 4,129,746 + PFLU_RS18195 0.71 -1.6 4,129,746 + PFLU_RS18195 0.71 -1.9 4,129,747 - PFLU_RS18195 0.71 +1.5 4,129,747 - PFLU_RS18195 0.71 -0.5 4,129,747 - PFLU_RS18195 0.71 +1.1 4,129,747 - PFLU_RS18195 0.71 -0.7 4,129,747 - PFLU_RS18195 0.71 -2.1 4,129,747 - PFLU_RS18195 0.71 -0.7 4,129,747 - PFLU_RS18195 0.71 +0.5 4,129,747 - PFLU_RS18195 0.71 +2.3 4,129,747 - PFLU_RS18195 0.71 +0.1 4,129,747 - PFLU_RS18195 0.71 +0.5 4,129,747 - PFLU_RS18195 0.71 -0.0 4,129,747 - PFLU_RS18195 0.71 +0.1 4,129,749 + PFLU_RS18195 0.72 -2.1 4,129,749 + PFLU_RS18195 0.72 -1.1 4,129,750 - PFLU_RS18195 0.72 -0.3 4,129,750 - PFLU_RS18195 0.72 -0.9 4,129,750 - PFLU_RS18195 0.72 -2.1 4,129,812 + PFLU_RS18195 0.78 -0.1 4,129,812 + PFLU_RS18195 0.78 -3.0 4,129,813 - PFLU_RS18195 0.78 +1.1 4,129,813 - PFLU_RS18195 0.78 -1.6 4,130,016 + -0.3 4,130,017 - +0.5 4,130,182 - PFLU_RS18200 0.15 -0.9 4,130,182 - PFLU_RS18200 0.15 +2.4 4,130,182 - PFLU_RS18200 0.15 +0.6 4,130,276 + PFLU_RS18200 0.26 +2.1 4,130,276 + PFLU_RS18200 0.26 +0.3 4,130,373 + PFLU_RS18200 0.36 +2.1 4,130,373 + PFLU_RS18200 0.36 +1.8 4,130,373 + PFLU_RS18200 0.36 -0.5 4,130,374 - PFLU_RS18200 0.36 -2.3 4,130,565 + PFLU_RS18200 0.57 +3.1 4,130,565 + PFLU_RS18200 0.57 +1.8 4,130,565 + PFLU_RS18200 0.57 +0.5 4,130,565 + PFLU_RS18200 0.57 +2.1 4,130,566 - PFLU_RS18200 0.57 -3.2 4,130,566 - PFLU_RS18200 0.57 +2.5 4,130,566 - PFLU_RS18200 0.57 -0.5 4,130,566 - PFLU_RS18200 0.57 -2.1 4,130,566 - PFLU_RS18200 0.57 -2.1 4,130,566 - PFLU_RS18200 0.57 +1.6 4,130,566 - PFLU_RS18200 0.57 +3.4 4,130,566 - PFLU_RS18200 0.57 +0.1 4,130,598 + PFLU_RS18200 0.60 -0.6 4,130,599 - PFLU_RS18200 0.60 +0.5 4,130,643 + PFLU_RS18200 0.65 +1.4 4,130,643 + PFLU_RS18200 0.65 -1.7 4,130,643 + PFLU_RS18200 0.65 -1.8 4,130,643 + PFLU_RS18200 0.65 -2.2 4,130,644 - PFLU_RS18200 0.65 +1.4 4,130,644 - PFLU_RS18200 0.65 +1.5 4,130,644 - PFLU_RS18200 0.65 -0.9 4,130,649 + PFLU_RS18200 0.66 -0.7 4,130,649 + PFLU_RS18200 0.66 -1.9 4,130,649 + PFLU_RS18200 0.66 +0.2 4,130,650 - PFLU_RS18200 0.66 +1.8 4,130,650 - PFLU_RS18200 0.66 +2.0 4,130,650 - PFLU_RS18200 0.66 -0.1 4,130,650 - PFLU_RS18200 0.66 +0.6 4,130,650 - PFLU_RS18200 0.66 +2.9 4,130,650 - PFLU_RS18200 0.66 -1.1 4,130,650 - PFLU_RS18200 0.66 -0.5 4,130,652 + PFLU_RS18200 0.66 -2.2 4,130,652 + PFLU_RS18200 0.66 +1.3 4,130,652 + PFLU_RS18200 0.66 +0.8 4,130,652 + PFLU_RS18200 0.66 +1.4 4,130,652 + PFLU_RS18200 0.66 -2.3 4,130,652 + PFLU_RS18200 0.66 +0.7 4,130,653 - PFLU_RS18200 0.66 +0.5 4,130,653 - PFLU_RS18200 0.66 -1.1 4,130,653 - PFLU_RS18200 0.66 +1.7 4,130,653 - PFLU_RS18200 0.66 -0.9 4,130,653 - PFLU_RS18200 0.66 +0.8 4,130,653 - PFLU_RS18200 0.66 +0.2 4,130,653 - PFLU_RS18200 0.66 +1.7 4,130,961 + +1.0 4,130,961 + -0.6 4,130,961 + +1.5 4,130,961 + +0.1 4,130,962 - +1.3 4,130,962 - -1.3 4,130,962 - +3.2 4,130,962 - +2.3 4,130,962 - +0.4
Or see this region's nucleotide sequence