Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS16410

Experiment: D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride
3,719,671	-		PFLU_RS16405	0.49	-1.0
3,719,989	+		PFLU_RS16405	0.82	-0.8
3,719,989	+		PFLU_RS16405	0.82	+0.6
3,719,989	+		PFLU_RS16405	0.82	+1.5
3,719,990	-		PFLU_RS16405	0.82	-1.3
3,719,990	-		PFLU_RS16405	0.82	-1.1
3,719,990	-		PFLU_RS16405	0.82	+1.2
3,719,990	-		PFLU_RS16405	0.82	-0.6
3,719,990	-		PFLU_RS16405	0.82	+1.3
3,719,990	-		PFLU_RS16405	0.82	-1.1
3,719,990	-		PFLU_RS16405	0.82	+1.0
3,720,065	-				+2.2
3,720,094	+				+1.3
3,720,095	-				+1.6
3,720,095	-				-2.1
3,720,170	+				+2.4
3,720,170	+				+1.7
3,720,170	+				+2.0
3,720,171	-				-0.6
3,720,171	-				-0.1
3,720,171	-				+2.0
3,720,171	-				+0.0
3,720,171	-				+3.4
3,720,171	-				-0.8
3,720,171	-				+1.3
3,720,171	-				+1.8
3,720,248	+				+1.0
3,720,249	-				-0.5
3,720,249	-				-2.4
3,720,249	-				-1.6
3,720,255	+				-1.3
3,720,255	+				+3.4
3,720,255	+				+3.1
3,720,256	-				-1.3
3,720,256	-				+0.7
3,720,256	-				-0.3
3,720,256	-				-1.0
3,720,299	+				+0.4
3,720,299	+				+0.4
3,720,299	+				+2.1
3,720,299	+				-0.8
3,720,299	+				+0.9
3,720,299	+				-0.5
3,720,299	+				-1.9
3,720,299	+				+2.0
3,720,299	+				+0.0
3,720,299	+				-0.4
3,720,300	-				+1.2
3,720,300	-				+0.2
3,720,300	-				-0.8
3,720,300	-				-2.2
3,720,316	+				+2.4
3,720,316	+				-1.0
3,720,316	+				-0.8
3,720,317	-				+0.3
3,720,317	-				-0.3
3,720,317	-				-0.8
3,720,317	-				-0.6
3,720,317	-				+2.2
3,720,317	-				+1.0
3,720,327	-				+1.4
3,720,332	+				+1.6
3,720,332	+				+1.0
3,720,332	+				+0.4
3,720,371	-				-2.0
3,720,371	-				-2.2
3,720,379	+				+3.4
3,720,379	+				+1.2
3,720,379	+				-1.1
3,720,379	+				+1.6
3,720,380	-				-1.1
3,720,380	-				-0.4
3,720,384	+				+2.2
3,720,384	+				+2.9
3,720,384	+				+2.0
3,720,384	+				+2.6
3,720,384	+				-2.1
3,720,384	+				+3.0
3,720,384	+				+0.0
3,720,384	+				+1.0
3,720,384	+				+0.0
3,720,384	+				+1.2
3,720,384	+				+1.1
3,720,385	-				+0.4
3,720,385	-				-0.8
3,720,385	-				+0.3
3,720,385	-				+1.8
3,720,385	-				+2.0
3,720,385	-				+0.4
3,720,385	-				-1.6
3,720,385	-				-2.3
3,720,385	-				-0.3
3,720,385	-				+0.4
3,720,385	-				+3.8
3,720,385	-				+0.4
3,720,391	+				+0.4
3,720,391	+				+1.1
3,720,391	+				+0.5
3,720,391	+				+1.8
3,720,392	-				-2.4
3,720,392	-				-0.8
3,720,392	-				-2.7
3,720,451	-				-1.4
3,720,451	-				+0.0
3,720,463	+				+3.3
3,720,463	+				+3.2
3,720,464	-				+1.2
3,720,464	-				+1.4
3,720,464	-				+0.8
3,720,501	+				-1.8
3,720,502	-				-0.4
3,720,515	+				+0.7
3,720,516	-				+0.0
3,720,516	-				-1.0
3,720,533	+				-0.3
3,720,534	-				+0.0
3,720,534	-				-0.8
3,720,534	-				+0.3
3,720,550	+				+0.9
3,720,550	+				+3.5
3,720,550	+				+2.5
3,720,551	-				-1.7
3,720,551	-				-0.3
3,720,566	+				-1.4
3,720,566	+				-2.0
3,720,567	-				-2.3
3,720,567	-				-1.3
3,720,580	+				+2.4
3,720,581	-				+2.7
3,720,621	-				-1.3
3,720,662	+				-0.6
3,720,662	+				-0.3
3,720,662	+				-0.6
3,720,662	+				+1.0
3,720,662	+				-1.4
3,720,662	+				-1.7
3,720,662	+				-0.1
3,720,662	+				-2.0
3,720,662	+				-1.4
3,720,662	+				-1.0
3,720,663	-				-2.6
3,720,663	-				-2.0
3,720,663	-				+1.9
3,720,663	-				-1.4
3,720,663	-				-1.9
3,720,663	-				+0.0
3,720,663	-				-1.8
3,720,663	-				+0.4
3,720,683	+				-2.2
3,720,683	+				-1.6
3,720,683	+				+0.0
3,720,684	-				-1.6
3,720,684	-				-1.6
3,720,684	-				-2.8
3,720,684	-				+2.4
3,720,684	-				+0.4
3,720,684	-				-1.1
3,720,701	+				+0.0
3,720,702	-				-1.1
3,720,916	+		PFLU_RS16410	0.16	-1.0
3,720,916	+		PFLU_RS16410	0.16	-2.5
3,720,917	-		PFLU_RS16410	0.16	-2.7
3,720,917	-		PFLU_RS16410	0.16	-0.3
3,720,942	-		PFLU_RS16410	0.18	+0.3
3,720,942	-		PFLU_RS16410	0.18	-2.1
3,721,023	+		PFLU_RS16410	0.23	-0.8
3,721,023	+		PFLU_RS16410	0.23	-2.3
3,721,023	+		PFLU_RS16410	0.23	+0.0
3,721,023	+		PFLU_RS16410	0.23	-2.1
3,721,023	+		PFLU_RS16410	0.23	-1.9
3,721,023	+		PFLU_RS16410	0.23	+0.0
3,721,023	+		PFLU_RS16410	0.23	-2.4
3,721,023	+		PFLU_RS16410	0.23	-0.6
3,721,023	+		PFLU_RS16410	0.23	+0.4
3,721,023	+		PFLU_RS16410	0.23	+1.2
3,721,023	+		PFLU_RS16410	0.23	-1.3
3,721,023	+		PFLU_RS16410	0.23	-2.4
3,721,023	+		PFLU_RS16410	0.23	-1.1
3,721,023	+		PFLU_RS16410	0.23	-2.1
3,721,023	+		PFLU_RS16410	0.23	-3.1
3,721,023	+		PFLU_RS16410	0.23	+0.0
3,721,023	+		PFLU_RS16410	0.23	-0.8
3,721,023	+		PFLU_RS16410	0.23	-0.6
3,721,023	+		PFLU_RS16410	0.23	-1.9
3,721,023	+		PFLU_RS16410	0.23	+0.0
3,721,023	+		PFLU_RS16410	0.23	-0.1
3,721,023	+		PFLU_RS16410	0.23	-2.0
3,721,023	+		PFLU_RS16410	0.23	-2.3
3,721,023	+		PFLU_RS16410	0.23	-0.2
3,721,023	+		PFLU_RS16410	0.23	-0.8
3,721,023	+		PFLU_RS16410	0.23	-1.1
3,721,023	+		PFLU_RS16410	0.23	-2.8
3,721,023	+		PFLU_RS16410	0.23	-1.8
3,721,023	+		PFLU_RS16410	0.23	-1.1
3,721,023	+		PFLU_RS16410	0.23	-0.6
3,721,023	+		PFLU_RS16410	0.23	-1.0
3,721,023	+		PFLU_RS16410	0.23	-0.8
3,721,024	-		PFLU_RS16410	0.23	-2.7
3,721,024	-		PFLU_RS16410	0.23	+0.0
3,721,024	-		PFLU_RS16410	0.23	-0.3
3,721,024	-		PFLU_RS16410	0.23	-2.1
3,721,024	-		PFLU_RS16410	0.23	+0.4
3,721,024	-		PFLU_RS16410	0.23	-1.1
3,721,024	-		PFLU_RS16410	0.23	-0.6
3,721,024	-		PFLU_RS16410	0.23	-2.4
3,721,024	-		PFLU_RS16410	0.23	-0.8
3,721,024	-		PFLU_RS16410	0.23	-1.1
3,721,024	-		PFLU_RS16410	0.23	-0.6
3,721,024	-		PFLU_RS16410	0.23	+0.7
3,721,024	-		PFLU_RS16410	0.23	-0.6
3,721,024	-		PFLU_RS16410	0.23	-1.4
3,721,024	-		PFLU_RS16410	0.23	-0.4
3,721,024	-		PFLU_RS16410	0.23	-0.8
3,721,024	-		PFLU_RS16410	0.23	-1.4
3,721,024	-		PFLU_RS16410	0.23	+0.2
3,721,024	-		PFLU_RS16410	0.23	-3.4
3,721,024	-		PFLU_RS16410	0.23	-1.3
3,721,024	-		PFLU_RS16410	0.23	+0.3
3,721,024	-		PFLU_RS16410	0.23	-0.4
3,721,024	-		PFLU_RS16410	0.23	-0.6
3,721,024	-		PFLU_RS16410	0.23	+0.0
3,721,024	-		PFLU_RS16410	0.23	+0.0
3,721,024	-		PFLU_RS16410	0.23	-1.1
3,721,024	-		PFLU_RS16410	0.23	-0.8
3,721,024	-		PFLU_RS16410	0.23	-0.3
3,721,024	-		PFLU_RS16410	0.23	-1.8
3,721,024	-		PFLU_RS16410	0.23	-3.0
3,721,024	-		PFLU_RS16410	0.23	-2.8
3,721,024	-		PFLU_RS16410	0.23	-2.0
3,721,024	-		PFLU_RS16410	0.23	-1.4
3,721,024	-		PFLU_RS16410	0.23	-2.9
3,721,024	-		PFLU_RS16410	0.23	-0.3
3,721,024	-		PFLU_RS16410	0.23	-0.4
3,721,024	-		PFLU_RS16410	0.23	+1.0
3,721,024	-		PFLU_RS16410	0.23	-1.6
3,721,027	+		PFLU_RS16410	0.23	-1.8
3,721,027	+		PFLU_RS16410	0.23	-1.7
3,721,027	+		PFLU_RS16410	0.23	-1.6
3,721,027	+		PFLU_RS16410	0.23	-1.4
3,721,027	+		PFLU_RS16410	0.23	-1.6
3,721,027	+		PFLU_RS16410	0.23	-1.6
3,721,027	+		PFLU_RS16410	0.23	-0.5
3,721,027	+		PFLU_RS16410	0.23	-0.3
3,721,027	+		PFLU_RS16410	0.23	-0.8
3,721,027	+		PFLU_RS16410	0.23	+0.4
3,721,027	+		PFLU_RS16410	0.23	-1.9
3,721,027	+		PFLU_RS16410	0.23	-1.3
3,721,028	-		PFLU_RS16410	0.23	-1.3
3,721,028	-		PFLU_RS16410	0.23	-1.4
3,721,028	-		PFLU_RS16410	0.23	-0.6
3,721,028	-		PFLU_RS16410	0.23	-0.9
3,721,028	-		PFLU_RS16410	0.23	-1.7
3,721,028	-		PFLU_RS16410	0.23	-1.1
3,721,028	-		PFLU_RS16410	0.23	+0.4
3,721,028	-		PFLU_RS16410	0.23	-1.0
3,721,028	-		PFLU_RS16410	0.23	+1.0
3,721,028	-		PFLU_RS16410	0.23	-2.4
3,721,028	-		PFLU_RS16410	0.23	-1.9
3,721,028	-		PFLU_RS16410	0.23	-2.1
3,721,047	+		PFLU_RS16410	0.25	-1.6
3,721,048	-		PFLU_RS16410	0.25	-1.6
3,721,048	-		PFLU_RS16410	0.25	-1.0
3,721,061	+		PFLU_RS16410	0.26	+0.0
3,721,062	-		PFLU_RS16410	0.26	+1.0
3,721,062	-		PFLU_RS16410	0.26	-2.7
3,721,062	-		PFLU_RS16410	0.26	-1.8
3,721,062	-		PFLU_RS16410	0.26	-0.8
3,721,062	-		PFLU_RS16410	0.26	-0.2
3,721,062	-		PFLU_RS16410	0.26	-0.8
3,721,069	-		PFLU_RS16410	0.26	-2.1
3,721,106	+		PFLU_RS16410	0.29	-0.8
3,721,224	+		PFLU_RS16410	0.36	-2.5
3,721,224	+		PFLU_RS16410	0.36	-0.3
3,721,224	+		PFLU_RS16410	0.36	-1.3
3,721,224	+		PFLU_RS16410	0.36	-1.4
3,721,224	+		PFLU_RS16410	0.36	+1.0
3,721,224	+		PFLU_RS16410	0.36	+2.0
3,721,224	+		PFLU_RS16410	0.36	-2.0
3,721,224	+		PFLU_RS16410	0.36	-1.7
3,721,225	-		PFLU_RS16410	0.36	-1.1
3,721,225	-		PFLU_RS16410	0.36	-2.4
3,721,225	-		PFLU_RS16410	0.36	+0.4
3,721,225	-		PFLU_RS16410	0.36	+0.4
3,721,225	-		PFLU_RS16410	0.36	+0.4
3,721,225	-		PFLU_RS16410	0.36	-1.4
3,721,225	-		PFLU_RS16410	0.36	-2.1
3,721,226	+		PFLU_RS16410	0.36	-1.2
3,721,226	+		PFLU_RS16410	0.36	-2.4
3,721,226	+		PFLU_RS16410	0.36	-1.9
3,721,226	+		PFLU_RS16410	0.36	-1.0
3,721,226	+		PFLU_RS16410	0.36	-1.3
3,721,226	+		PFLU_RS16410	0.36	-2.2
3,721,226	+		PFLU_RS16410	0.36	-1.1
3,721,226	+		PFLU_RS16410	0.36	+3.4
3,721,226	+		PFLU_RS16410	0.36	+0.0
3,721,226	+		PFLU_RS16410	0.36	-1.3
3,721,227	-		PFLU_RS16410	0.36	+0.4
3,721,227	-		PFLU_RS16410	0.36	-2.8
3,721,227	-		PFLU_RS16410	0.36	-1.5
3,721,227	-		PFLU_RS16410	0.36	-1.6
3,721,227	-		PFLU_RS16410	0.36	+0.4
3,721,227	-		PFLU_RS16410	0.36	+1.7
3,721,227	-		PFLU_RS16410	0.36	-0.6
3,721,227	-		PFLU_RS16410	0.36	-1.0
3,721,227	-		PFLU_RS16410	0.36	-3.0
3,721,227	-		PFLU_RS16410	0.36	-0.8
3,721,227	-		PFLU_RS16410	0.36	-2.6
3,721,281	+		PFLU_RS16410	0.40	-1.7
3,721,362	+		PFLU_RS16410	0.45	-0.4
3,721,362	+		PFLU_RS16410	0.45	+1.6
3,721,362	+		PFLU_RS16410	0.45	+0.0
3,721,399	-		PFLU_RS16410	0.47	-1.4
3,721,399	-		PFLU_RS16410	0.47	+0.3
3,721,409	+		PFLU_RS16410	0.48	-2.6
3,721,410	-		PFLU_RS16410	0.48	-2.1
3,721,410	-		PFLU_RS16410	0.48	+2.6
3,721,410	-		PFLU_RS16410	0.48	+1.0
3,721,431	+		PFLU_RS16410	0.49	-0.7
3,721,431	+		PFLU_RS16410	0.49	+1.0
3,721,431	+		PFLU_RS16410	0.49	-1.6
3,721,432	-		PFLU_RS16410	0.49	-1.3
3,721,432	-		PFLU_RS16410	0.49	+1.0
3,721,432	-		PFLU_RS16410	0.49	-1.9
3,721,432	-		PFLU_RS16410	0.49	-2.6
3,721,432	-		PFLU_RS16410	0.49	+0.0
3,721,448	+		PFLU_RS16410	0.51	-0.4
3,721,448	+		PFLU_RS16410	0.51	+1.0
3,721,449	-		PFLU_RS16410	0.51	-1.8
3,721,583	+		PFLU_RS16410	0.59	-1.1
3,721,908	+		PFLU_RS16410	0.80	-0.1
3,721,935	+		PFLU_RS16410	0.82	-2.1
3,721,935	+		PFLU_RS16410	0.82	-0.3
3,721,936	-		PFLU_RS16410	0.82	+2.5
3,721,936	-		PFLU_RS16410	0.82	-0.6
3,721,936	-		PFLU_RS16410	0.82	-0.3
3,721,936	-		PFLU_RS16410	0.82	+0.0
3,721,970	+		PFLU_RS16410	0.84	-0.0
3,721,970	+		PFLU_RS16410	0.84	-2.1
3,721,970	+		PFLU_RS16410	0.84	-0.6
3,721,971	-		PFLU_RS16410	0.84	+0.4
3,722,046	+		PFLU_RS16410	0.89	+0.4
3,722,047	-		PFLU_RS16410	0.89	-0.1
3,722,047	-		PFLU_RS16410	0.89	-0.6
3,722,172	+				+0.0
3,722,172	+				+0.2
3,722,172	+				-2.2
3,722,172	+				-1.0
3,722,172	+				-2.4
3,722,172	+				-2.0
3,722,172	+				+3.0
3,722,173	-				-1.1
3,722,173	-				+0.4
3,722,173	-				-1.3
3,722,173	-				-0.6
3,722,173	-				-1.4
3,722,214	+				-0.6
3,722,214	+				-1.6
3,722,214	+				+2.9
3,722,215	-				-1.9
3,722,234	+				-1.1
3,722,234	+				-1.0
3,722,234	+				+0.0
3,722,234	+				+1.5
3,722,234	+				+0.0
3,722,235	-				-1.4
3,722,235	-				-0.2
3,722,235	-				-0.6
3,722,235	-				-0.1
3,722,235	-				+0.7
3,722,235	-				-1.6
3,722,235	-				+1.0
3,722,235	-				-0.6
3,722,330	+				+0.4
3,722,330	+				-0.2
3,722,331	-				-1.0
3,722,331	-				-0.6
3,722,331	-				-2.0
3,722,331	-				-0.3
3,722,406	+				+0.2
3,722,407	-				+1.8
3,722,407	-				-0.3
3,722,407	-				-0.8
3,722,460	+		PFLU_RS16415	0.13	-1.8
3,722,511	+		PFLU_RS16415	0.16	-0.8
3,722,531	+		PFLU_RS16415	0.17	+2.0
3,722,585	+		PFLU_RS16415	0.20	-1.3
3,722,585	+		PFLU_RS16415	0.20	+0.7
3,722,585	+		PFLU_RS16415	0.20	-0.4
3,722,585	+		PFLU_RS16415	0.20	-0.3
3,722,585	+		PFLU_RS16415	0.20	-1.3
3,722,585	+		PFLU_RS16415	0.20	+0.4
3,722,585	+		PFLU_RS16415	0.20	-0.8
3,722,585	+		PFLU_RS16415	0.20	+0.0
3,722,585	+		PFLU_RS16415	0.20	-2.6
3,722,586	-		PFLU_RS16415	0.20	-0.6
3,722,586	-		PFLU_RS16415	0.20	-0.5
3,722,586	-		PFLU_RS16415	0.20	-1.0
3,722,586	-		PFLU_RS16415	0.20	-2.4
3,722,586	-		PFLU_RS16415	0.20	-2.3
3,722,586	-		PFLU_RS16415	0.20	-1.4
3,722,586	-		PFLU_RS16415	0.20	+0.8
3,722,586	-		PFLU_RS16415	0.20	-1.6
3,722,586	-		PFLU_RS16415	0.20	+0.4
3,722,754	-		PFLU_RS16415	0.30	-1.7
3,722,754	-		PFLU_RS16415	0.30	-1.9
3,722,831	+		PFLU_RS16415	0.34	+0.6
3,722,831	+		PFLU_RS16415	0.34	-1.4
3,722,831	+		PFLU_RS16415	0.34	-1.3
3,722,832	-		PFLU_RS16415	0.34	-1.4
3,722,832	-		PFLU_RS16415	0.34	-1.9
3,722,858	+		PFLU_RS16415	0.36	+0.6
3,722,859	-		PFLU_RS16415	0.36	-1.8
3,722,859	-		PFLU_RS16415	0.36	-1.3
3,722,859	-		PFLU_RS16415	0.36	-1.4
3,722,859	-		PFLU_RS16415	0.36	-2.7
3,722,871	-		PFLU_RS16415	0.36	-1.4
3,723,018	+		PFLU_RS16415	0.45	-0.8
3,723,179	-		PFLU_RS16415	0.54	-2.1